Co-expression analysis

Gene ID	Gma.6024.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g41290: receptor-like protein kinase-related (HF=5e-1)
Module size	6 genes
NF	0.40
%ile	70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.98	Gma.6024.1.S1_s_at	CD397288	-	-	5e-1	At5g41290	receptor-like protein kinase-related	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.8340.1.S1_at	AW201258	-	-	3e-3	At1g72390	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	GmaAffx.31571.1.S1_at	BU551140	-	-	2e+0	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.5040.1.S1_at	BI970582	-	-	1e-7	At5g61140	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	Gma.2802.1.S1_at	CD396311	-	-	2e-29	At3g06810	IBR3 (IBA-RESPONSE 3)	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.98	Gma.8652.1.A1_at	CD407809	-	-	3e-1	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294571	41_3212.2L.R9L3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1607195_at, orthologous to the query gene, Gma.6024.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	1607195_at	At5g41290	hypothetical protein LOC100240982	-	1e-1	At4g27460	CBS domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1607834_at	At5g41290	hypothetical protein LOC100241190	-	1e+0	At4g34780	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1606664_at	At5g41290	hypothetical protein LOC100255704	-	2e-13	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	O.I.	H.G.	S.X.	Please select
0.48	68.8	1607940_at	At5g41290	hypothetical protein LOC100261463	-	6e-1	At1g69470	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	53.6	1611040_at	At5g41290	hypothetical protein LOC100263053	-	3e-7	At1g65020	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	1620191_at	At5g41290	hypothetical protein LOC100245656	-	1e+0	At3g08636	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	41.3	1611156_at	At5g41290	hypothetical protein LOC100247631	-	1e+1	At3g24250	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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