CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.5748.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g64813: LIP1 (Light Insensitive Period1) (HF=1e-63)

Module size 29 genes

NF 0.37

%ile 65.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 92.5 0.98 Gma.5748.1.S1_at BU761120 - - 1e-63 At5g64813 LIP1 (Light Insensitive Period1) O.I. H.G. S.X.
0.68 86.4 0.98 Gma.1602.1.S1_a_at BI971053 - - 2e-171 At3g50000 CKA2 (CASEIN KINASE II, ALPHA CHAIN 2) O.I. H.G. S.X.
0.51 72.3 0.98 Gma.13364.1.A1_s_at BI969885 - - 1e+1 At5g23903 unknown protein O.I. H.G. S.X.
0.50 71.7 0.98 Gma.1602.1.S1_x_at BI971053 - - 2e-171 At3g50000 CKA2 (CASEIN KINASE II, ALPHA CHAIN 2) O.I. H.G. S.X.
0.48 67.7 0.98 Gma.5562.1.S1_a_at AW348762 - - 4e-7 At2g47070 SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1) O.I. H.G. S.X.
0.47 66.6 0.98 Gma.6579.1.S1_at BU763449 - - 3e-34 At3g04830 binding O.I. H.G. S.X.
0.43 60.6 0.98 Gma.6057.1.S1_at BI968398 - - 1e+0 At1g17430 hydrolase, alpha/beta fold family protein O.I. H.G. S.X.
0.42 59.3 0.98 Gma.15852.1.S1_at CD411038 - - 3e-23 At5g58060 YKT61 O.I. H.G. S.X.
0.41 58.1 0.98 Gma.4496.1.A1_at BF219518 - - 1e+1 At5g13810 glutaredoxin family protein O.I. H.G. S.X.
0.38 53.3 0.98 Gma.5774.1.S1_at BG511460 - - 2e+0 At3g60060 - O.I. H.G. S.X.
0.38 53.3 0.98 Gma.4412.1.S1_x_at L28002.1 TATA-box binding protein - 4e-51 At1g55520 TBP2 (TATA BINDING PROTEIN 2) O.I. H.G. S.X.
0.36 50.8 0.98 GmaAffx.61837.1.S1_at BU762817 - - 2e-11 At3g25840 protein kinase family protein O.I. H.G. S.X.
0.36 50.8 0.98 Gma.10829.1.S1_at CD404695 - - 1e-4 At2g28360 - O.I. H.G. S.X.
0.34 47.2 0.98 Gma.8823.2.S1_at BU765654 - - 1e-6 At5g45560 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein O.I. H.G. S.X.
0.34 47.2 0.98 GmaAffx.14834.1.S1_at AW350241 - - 1e-3 At5g51340 unknown protein O.I. H.G. S.X.
0.34 47.2 0.98 Gma.3626.1.S1_at BE800416 - - 5e-38 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) O.I. H.G. S.X.
0.33 46.1 0.98 Gma.10825.1.S1_at CD407330 - - 1e-3 At3g01435 Expressed protein O.I. H.G. S.X.
0.32 43.7 0.98 GmaAffx.7280.1.S1_at AW459314 - - 8e-9 At4g34040 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.30 40.4 0.98 Gma.5567.1.S1_at BM093246 - - 5e-5 At5g45360 F-box family protein O.I. H.G. S.X.
0.29 39.0 0.98 Gma.6614.1.S1_at BU082985 - - 7e-11 At5g63880 VPS20.1 O.I. H.G. S.X.
0.28 39.0 0.98 Gma.1837.1.S1_at AW309339 - - 7e-9 At1g71900 - O.I. H.G. S.X.
0.28 39.0 0.98 Gma.8167.1.S1_at BI945308 - - 5e+0 At4g17160 ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A) O.I. H.G. S.X.
0.26 33.9 0.98 Gma.3735.2.S1_at BU545833 - - 1e-60 At1g14400 UBC1 (UBIQUITIN CARRIER PROTEIN 1) O.I. H.G. S.X.
0.26 33.9 0.98 Gma.10823.2.S1_at BM307619 - - 2e-82 At5g36230 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein O.I. H.G. S.X.
0.26 33.9 0.98 Gma.5346.1.S1_x_at BE210783 - - 5e-2 At2g35510 SRO1 (SIMILAR TO RCD ONE 1) O.I. H.G. S.X.
0.25 32.6 0.98 Gma.7667.1.S1_a_at AW781737 - - 2e-11 At4g24840 - O.I. H.G. S.X.
0.25 32.6 0.98 Gma.3234.1.S1_at CD397450 - - 6e-18 At1g05500 NTMC2T2.1 O.I. H.G. S.X.
0.23 29.9 0.98 Gma.13346.1.S1_at CD391281 - - 6e-12 At1g61780 postsynaptic protein-related O.I. H.G. S.X.
0.17 21.2 0.98 GmaAffx.51562.1.S1_at BE822242 - - 4e-1 At5g67390 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.83	92.5	0.98	Gma.5748.1.S1_at	BU761120	-	-	1e-63	At5g64813	LIP1 (Light Insensitive Period1)	O.I.	H.G.	S.X.
0.68	86.4	0.98	Gma.1602.1.S1_a_at	BI971053	-	-	2e-171	At3g50000	CKA2 (CASEIN KINASE II, ALPHA CHAIN 2)	O.I.	H.G.	S.X.
0.51	72.3	0.98	Gma.13364.1.A1_s_at	BI969885	-	-	1e+1	At5g23903	unknown protein	O.I.	H.G.	S.X.
0.50	71.7	0.98	Gma.1602.1.S1_x_at	BI971053	-	-	2e-171	At3g50000	CKA2 (CASEIN KINASE II, ALPHA CHAIN 2)	O.I.	H.G.	S.X.
0.48	67.7	0.98	Gma.5562.1.S1_a_at	AW348762	-	-	4e-7	At2g47070	SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1)	O.I.	H.G.	S.X.
0.47	66.6	0.98	Gma.6579.1.S1_at	BU763449	-	-	3e-34	At3g04830	binding	O.I.	H.G.	S.X.
0.43	60.6	0.98	Gma.6057.1.S1_at	BI968398	-	-	1e+0	At1g17430	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.
0.42	59.3	0.98	Gma.15852.1.S1_at	CD411038	-	-	3e-23	At5g58060	YKT61	O.I.	H.G.	S.X.
0.41	58.1	0.98	Gma.4496.1.A1_at	BF219518	-	-	1e+1	At5g13810	glutaredoxin family protein	O.I.	H.G.	S.X.
0.38	53.3	0.98	Gma.5774.1.S1_at	BG511460	-	-	2e+0	At3g60060	-	O.I.	H.G.	S.X.
0.38	53.3	0.98	Gma.4412.1.S1_x_at	L28002.1	TATA-box binding protein	-	4e-51	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.
0.36	50.8	0.98	GmaAffx.61837.1.S1_at	BU762817	-	-	2e-11	At3g25840	protein kinase family protein	O.I.	H.G.	S.X.
0.36	50.8	0.98	Gma.10829.1.S1_at	CD404695	-	-	1e-4	At2g28360	-	O.I.	H.G.	S.X.
0.34	47.2	0.98	Gma.8823.2.S1_at	BU765654	-	-	1e-6	At5g45560	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	O.I.	H.G.	S.X.
0.34	47.2	0.98	GmaAffx.14834.1.S1_at	AW350241	-	-	1e-3	At5g51340	unknown protein	O.I.	H.G.	S.X.
0.34	47.2	0.98	Gma.3626.1.S1_at	BE800416	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.
0.33	46.1	0.98	Gma.10825.1.S1_at	CD407330	-	-	1e-3	At3g01435	Expressed protein	O.I.	H.G.	S.X.
0.32	43.7	0.98	GmaAffx.7280.1.S1_at	AW459314	-	-	8e-9	At4g34040	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.30	40.4	0.98	Gma.5567.1.S1_at	BM093246	-	-	5e-5	At5g45360	F-box family protein	O.I.	H.G.	S.X.
0.29	39.0	0.98	Gma.6614.1.S1_at	BU082985	-	-	7e-11	At5g63880	VPS20.1	O.I.	H.G.	S.X.
0.28	39.0	0.98	Gma.1837.1.S1_at	AW309339	-	-	7e-9	At1g71900	-	O.I.	H.G.	S.X.
0.28	39.0	0.98	Gma.8167.1.S1_at	BI945308	-	-	5e+0	At4g17160	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	O.I.	H.G.	S.X.
0.26	33.9	0.98	Gma.3735.2.S1_at	BU545833	-	-	1e-60	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.
0.26	33.9	0.98	Gma.10823.2.S1_at	BM307619	-	-	2e-82	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.
0.26	33.9	0.98	Gma.5346.1.S1_x_at	BE210783	-	-	5e-2	At2g35510	SRO1 (SIMILAR TO RCD ONE 1)	O.I.	H.G.	S.X.
0.25	32.6	0.98	Gma.7667.1.S1_a_at	AW781737	-	-	2e-11	At4g24840	-	O.I.	H.G.	S.X.
0.25	32.6	0.98	Gma.3234.1.S1_at	CD397450	-	-	6e-18	At1g05500	NTMC2T2.1	O.I.	H.G.	S.X.
0.23	29.9	0.98	Gma.13346.1.S1_at	CD391281	-	-	6e-12	At1g61780	postsynaptic protein-related	O.I.	H.G.	S.X.
0.17	21.2	0.98	GmaAffx.51562.1.S1_at	BE822242	-	-	4e-1	At5g67390	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Gma.5748.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g64813: LIP1 (Light Insensitive Period1) (HF=1e-63)
Module size	29 genes
NF	0.37
%ile	65.2

Co-expression analysis

Gene ID Gma.5748.1.S1_at Gene name Homology with ArabidopsisSimilar to At5g64813: LIP1 (Light Insensitive Period1) (HF=1e-63) Module size 29 genes NF 0.37 %ile 65.2

Co-expressed genes

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Gma.5748.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g64813: LIP1 (Light Insensitive Period1) (HF=1e-63)

Module size 29 genes

NF 0.37

%ile 65.2

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays