Co-expression analysis

Gene ID	Gma.5678.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g69410: ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) (HF=8e-61)
Module size	6 genes
NF	0.75
%ile	97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.99	Gma.5678.1.S1_at	CD405283	-	-	8e-61	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.91	98.6	0.99	Gma.5678.2.S1_a_at	CD417564	-	-	2e-70	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	Gma.3626.1.S1_at	BE800416	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.99	Gma.10823.2.S1_at	BM307619	-	-	2e-82	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	GmaAffx.92103.1.S1_s_at	CF806493	translationally controlled tumor-like protein	-	6e-28	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.5678.1.S1_a_at	CD405283	-	-	8e-61	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.8	GSM147941	Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.5	96.6	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.4	96.4	GSM201100	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.4	96.4	GSM292211	74-C018.1A.R9A3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293333	22_1549.1Q.R078L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM201106	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.2	96.0	GSM201101	Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.2	96.0	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM201102	Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.1	95.8	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM201097	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.1	95.8	GSM201107	Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
3.0	95.6	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.249.122.S1_at, orthologous to the query gene, Gma.5678.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.36	61.6	PtpAffx.249.122.S1_at	At1g69410	hypothetical protein	-	1e-41	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.80	96.0	PtpAffx.218821.1.S1_at	At1g69410	hypothetical protein /// hypothetical protein /// hypothetical protein /// hypothetical protein /// hypothetical protein /// hypothetical protein /// hypothetical protein /// cc-nbs-lrr resistance protein /// hypothetical protein	-	2e+0	At4g05000	VPS28-2	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.73	93.6	PtpAffx.73932.1.A1_at	At1g69410	hypothetical protein	-	4e-1	At4g17785	MYB39 (myb domain protein 39)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.55	82.2	Ptp.5893.1.S1_s_at	At1g69410	hypothetical protein	-	3e-23	At1g55310	SR33	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.214551.1.S1_at	At1g69410	hypothetical protein	-	2e-10	At2g11520	CRCK3	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.212175.1.S1_at	At1g69410	hypothetical protein	-	4e-47	At5g16750	TOZ (TORMOZEMBRYO DEFECTIVE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage