Co-expression analysis

Gene ID Gma.5678.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g69410: ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3) (HF=8e-61)
Module size 6 genes
NF 0.75
%ile 97.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.99Gma.5678.1.S1_atCD405283--8e-61At1g69410ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)O.I.H.G.S.X.
0.9198.60.99Gma.5678.2.S1_a_atCD417564--2e-70At1g69410ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)O.I.H.G.S.X.
0.6786.10.99Gma.3626.1.S1_atBE800416--5e-38At2g44100ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)O.I.H.G.S.X.
0.6080.70.99Gma.10823.2.S1_atBM307619--2e-82At5g36230eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinO.I.H.G.S.X.
0.5778.80.98GmaAffx.92103.1.S1_s_atCF806493translationally controlled tumor-like protein-6e-28At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.5071.70.98Gma.5678.1.S1_a_atCD405283--8e-61At1g69410ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.796.8GSM147941Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.596.6GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.496.4GSM201100Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.496.4GSM29221174-C018.1A.R9A3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29333322_1549.1Q.R078L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM201106Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.296.0GSM201101Laser capture microdissected (LCM) axis parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.296.0GSM29217834-1006.1A.R003P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM201102Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.195.8GSM182036Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
3.195.8GSM191079Soybean_Cotyledon_ES1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
3.195.8GSM201097Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.195.8GSM201107Laser capture microdissected (LCM) axis vascular bundle at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
3.095.6GSM191078Soybean_Cotyledon_SUS2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0758800, orthologous to the query gene, Gma.5678.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5777.0Os03g0758800At1g69410-Eukaryotic translation initiation factor 5A-2(eIF-5A) (eIF-4D)7e-31At1g69410ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)O.I.H.G.S.X.
0.8094.6Os05g0445500At1g69410-60S acidic ribosomal protein P2B4e-10At2g2772060S acidic ribosomal protein P2 (RPP2A)O.I.H.G.S.X.
0.7793.1Os12g0567700At1g69410--5e-75At2g18020EMB2296 (embryo defective 2296)O.I.H.G.S.X.
0.7591.9Os02g0519900At1g69410-Elongation factor EF-2 (Fragment)0At1g56070LOS1O.I.H.G.S.X.
0.6787.2Os03g0177400At1g69410-EF-1 alpha0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.6583.8Os02g0717800At1g69410-Ribosomal protein L31e domain containing protein3e-10At5g5671060S ribosomal protein L31 (RPL31C)O.I.H.G.S.X.
0.6483.4Os03g0234200At1g69410-Ubiquitin fused to ribosomal protein L403e-45At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.6181.2Os03g0345200At1g69410-40S ribosomal protein S213e-10At5g27700structural constituent of ribosomeO.I.H.G.S.X.
0.6181.2Os03g0177500At1g69410-EF-1 alpha0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.5573.7Os01g0328400At1g69410-Ubiquitin7e-66At2g47110UBQ6O.I.H.G.S.X.
0.5269.6Os10g0411700At1g69410-Ribosomal protein S285e-3At3g1009040S ribosomal protein S28 (RPS28A)O.I.H.G.S.X.
0.4863.7Os05g0160200At1g69410-The start codon is not identified.6e-74At2g47110UBQ6O.I.H.G.S.X.
0.4863.7Os08g0558800At1g69410-60S ribosomal protein L10a-34e-63At5g2244060S ribosomal protein L10A (RPL10aC)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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