Co-expression analysis

Gene ID Gma.5662.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g39950: ATTRX2 (THIOREDOXIN 2) (HF=3e-5)
Module size 6 genes
NF 0.03
%ile 13.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6786.10.92Gma.5662.1.S1_atBM140147--3e-5At5g39950ATTRX2 (THIOREDOXIN 2)O.I.H.G.S.X.
0.4057.10.95Gma.7487.1.S1_atAW309945--3e-11At1g58360AAP1 (AMINO ACID PERMEASE 1)O.I.H.G.S.X.
0.1518.70.94Gma.7487.3.S1_atBQ453973--4e-26At5g49630AAP6 (AMINO ACID PERMEASE 6)O.I.H.G.S.X.
0.0811.00.94Gma.4687.1.S1_atAW309716--7e-4At5g44400FAD-binding domain-containing proteinO.I.H.G.S.X.
0.013.40.94GmaAffx.7932.2.S1_atBE211513--6e-2At2g42350zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.013.40.94GmaAffx.35331.1.S1_atBI967623--9e-1At4g30670unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.195.8GSM2923337_C085.1E.SLE3U, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage