Co-expression analysis

Gene ID	Gma.5650.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At4g39260: GR-RBP8 (HF=4e-6)
Module size	16 genes
NF	0.32
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	90.3	0.95	Gma.5650.2.S1_a_at	BG238507	-	-	4e-6	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.97	Gma.12520.1.S1_at	CD394537	-	-	2e+0	At4g00030	plastid-lipid associated protein PAP / fibrillin family protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.97	GmaAffx.87532.1.S1_s_at	BG155694	-	-	9e-1	At2g24590	splicing factor, putative	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.96	GmaAffx.73258.2.S1_at	BM528903	-	-	1e+0	At4g36540	BEE2 (BR Enhanced Expression 2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.96	GmaAffx.46661.1.S1_at	BI784809	-	-	1e-25	At2g28480	RNA binding	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.97	Gma.16462.2.S1_at	BE475088	-	-	2e-20	At1g21760	FBP7 (F-BOX PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.96	GmaAffx.15471.3.S1_s_at	BE346777	MYB transcription factor MYB145	-	4e-9	At5g59780	MYB59 (MYB DOMAIN PROTEIN 59)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.97	Gma.10975.2.S1_s_at	BQ743096	-	-	5e-6	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.97	GmaAffx.1853.2.S1_at	AW756762	-	-	9e-1	At4g33465	SCRL22 (SCR-Like 22)	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.97	Gma.4108.1.S1_s_at	BI701465	-	-	2e+0	At3g51410	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.97	GmaAffx.92773.1.S1_s_at	CF808498	-	-	4e-34	At4g31720	TAFII15 (TBP-ASSOCIATED FACTOR II 15)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.98	Gma.4853.2.S1_a_at	BU547313	-	-	2e-51	At5g56290	PEX5 (PEROXIN 5)	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.97	GmaAffx.74664.1.S1_at	BU965032	-	-	1e-2	At1g54170	CID3 (CTC-Interacting Domain 3)	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.97	Gma.16711.3.S1_a_at	AI437814	-	-	7e-2	At5g27541	-	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	Gma.4108.1.S1_a_at	BI701465	-	-	2e+0	At3g51410	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	15.1	0.97	GmaAffx.46164.1.S1_at	CA782418	-	-	1e-19	At1g63250	DEAD box RNA helicase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	97.2	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292959	38_C232.1M.R9M3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294293	45_3162.2I.R9I3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294571	41_3212.2L.R9L3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294059	17_3118.2G.R9G2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292917	8_C216.1L.R9L3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292258	78_C034.1B.R9B3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage