Co-expression analysis

Gene ID	Gma.5641.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g59840: Ras-related GTP-binding family protein (HF=1e-82)
Module size	31 genes
NF	0.42
%ile	71.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	0.97	Gma.5641.1.S1_at	AW349077	-	-	1e-82	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.98	GmaAffx.5376.10.S1_s_at	BU082924	-	-	2e-10	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.99	Gma.10823.2.S1_at	BM307619	-	-	2e-82	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	GmaAffx.74684.1.S1_at	BU547287	-	-	1e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.16949.1.S1_at	BI945119	-	-	1e-4	At1g01650	aspartic-type endopeptidase/ peptidase	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.98	Gma.7528.1.S1_s_at	CD415645	-	-	5e-10	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.11929.1.S1_x_at	AI437723	HMG-1 like protein gene	-	2e-13	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.98	Gma.933.1.S1_at	CD401061	-	-	1e-25	At5g54750	transport protein particle (TRAPP) component Bet3, putative	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	Gma.3861.1.S1_at	CD406972	-	-	3e-4	At1g75850	VPS35B (VPS35 HOMOLOG B)	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.3626.1.S1_at	BE800416	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.10247.1.S1_at	CD410794	-	-	6e+0	At5g45870	Bet v I allergen family protein	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.3839.1.S1_a_at	CD391787	-	-	2e-69	At1g60780	HAP13 (HAPLESS 13)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.8959.1.A1_at	BU765891	-	-	1e-1	At1g16810	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.98	Gma.11129.1.S1_s_at	BE657610	-	-	6e-119	At3g05840	ATSK12	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	Gma.5514.1.S1_at	AB060000.1	hypothetical protein LOC547474	-	1e-37	At1g26110	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	Gma.6614.1.S1_at	BU082985	-	-	7e-11	At5g63880	VPS20.1	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.8062.1.A1_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.5678.2.S1_a_at	CD417564	-	-	2e-70	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.5678.1.S1_at	CD405283	-	-	8e-61	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.4016.1.S1_at	BQ453912	-	-	6e-9	At4g30480	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	Gma.5514.1.S1_x_at	AB060000.1	hypothetical protein LOC547474	-	1e-37	At1g26110	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.7733.1.S1_at	BU549841	-	-	3e-7	At3g55070	-	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.7636.1.S1_at	AW351204	-	-	1e-20	At5g41950	binding	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.18085.1.S1_s_at	BI971003	-	-	5e-110	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	Gma.6104.3.S1_at	AW348082	-	-	3e-3	At5g63260	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.98	Gma.1266.1.S1_a_at	BU548161	-	-	2e-2	At4g12650	-	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.10799.1.S1_at	BG237181	-	-	4e-96	At4g26100	CK1 (CASEIN KINASE 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.13346.1.S1_at	CD391281	-	-	6e-12	At1g61780	postsynaptic protein-related	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.98	GmaAffx.10026.1.S1_at	BQ628569	-	-	3e-19	At5g43010	RPT4A	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	GmaAffx.92496.1.S1_s_at	CF808221	-	-	1e-75	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.2	97.4	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.6	96.7	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.5	96.6	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.5	96.6	GSM182036	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.2	96.0	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM182041	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM184829	Whole Seed at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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