Co-expression analysis

Gene ID	Gma.5491.2.S1_x_at
Gene name
Homology with Arabidopsis	Similar to At5g59570: myb family transcription factor (HF=3e+0)
Module size	27 genes
NF	0.39
%ile	68.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.6	0.91	Gma.5491.2.S1_x_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.65	83.8	0.95	Gma.5491.2.S1_at	BF425401	-	-	3e+0	At5g59570	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.92	GmaAffx.93013.1.S1_at	CF808738	-	-	3e-4	At2g26930	ATCDPMEK (4-(CYTIDINE 5'-PHOSPHO)-2-C-METHYL-D-ERITHRITOL KINASE)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.92	GmaAffx.92894.1.S1_s_at	CF807494	-	-	2e-8	At3g01420	DOX1	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.94	GmaAffx.18762.1.S1_at	BI971858	-	-	3e+0	At5g04750	F1F0-ATPase inhibitor protein, putative	O.I.	H.G.	S.X.	Please select
0.49	68.3	0.94	Gma.17605.3.S1_at	BQ079859	chalcone synthase 1	-	7e-20	At5g13930	TT4 (TRANSPARENT TESTA 4)	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.94	GmaAffx.92557.1.S1_s_at	CF806245	-	-	2e-6	At4g23270	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.95	Gma.12863.1.S1_at	BI967228	-	-	2e-23	At3g01420	DOX1	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.96	Gma.8401.1.A1_at	BU547972	-	-	3e-1	At3g26170	CYP71B19	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.93	GmaAffx.93133.1.S1_s_at	CF806755	-	-	4e-1	At2g12880	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.94	Gma.6727.1.S1_at	Y10493.1	-	-	9e-1	At3g26270	CYP71B25	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.95	GmaAffx.36619.1.S1_at	BI698968	-	-	2e-1	At5g22680	-	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.92	GmaAffx.86745.1.S1_s_at	BI424960	-	-	1e+0	At4g17210	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.93	GmaAffx.91156.1.S1_x_at	CF806881	-	-	3e-1	At5g36970	NHL25 (NDR1/HIN1-LIKE 25)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.95	GmaAffx.43343.3.S1_s_at	AI496624	2-hydroxyisoflavanone dehydratase	-	4e+0	At3g27503	SCRL19 (SCR-Like 19)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.94	GmaAffx.92458.1.S1_at	CF808183	-	-	2e-21	At3g21500	1-deoxy-D-xylulose-5-phosphate synthase	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.95	Gma.8449.1.S1_s_at	AF002258.1	4-coumarate:Coenzyme A ligase isoenzyme 4 /// 4-coumarate:CoA ligase isoenzyme 3	-	2e-14	At1g65060	4CL3	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.94	GmaAffx.87679.2.S1_s_at	AW102083	-	-	1e-3	At4g22590	trehalose-6-phosphate phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.95	GmaAffx.89508.1.A1_s_at	CK606172	-	-	4e-1	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.96	GmaAffx.92722.1.S1_at	CF807561	2-hydroxyisoflavanone dehydratase	-	6e-1	At2g30050	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.96	GmaAffx.48942.1.S1_at	BE023109	-	-	9e+0	Atcg00820	-	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.95	GmaAffx.18616.1.S1_at	BE021154	-	-	7e-3	At4g34540	isoflavone reductase family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.96	Gma.5491.1.S1_at	AW309940	-	-	1e+1	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.95	GmaAffx.74889.1.S1_at	CA851547	-	-	9e-12	At2g41690	AT-HSFB3	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.93	GmaAffx.63625.1.S1_at	BG507997	-	-	2e-5	At4g11830	PLDGAMMA2	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.96	GmaAffx.91013.1.S1_s_at	CF806738	-	-	5e+0	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.94	GmaAffx.9145.1.S1_s_at	BU763814	-	-	4e+0	At3g53420	PIP2A (PLASMA MEMBRANE INTRINSIC PROTEIN 2A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM293802	45_3067.2D.R9D3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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