Co-expression analysis

Gene ID	Gma.541.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g57110: ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) (HF=5e-70)
Module size	24 genes
NF	0.38
%ile	67.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.8	0.97	Gma.541.1.S1_at	AW156279	-	-	5e-70	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	O.I.	H.G.	S.X.	Please select
0.56	78.2	0.98	Gma.8062.1.A1_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	GmaAffx.93465.1.A1_s_at	CF809190	-	-	3e-1	At5g23340	-	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.98	Gma.10825.1.S1_at	CD407330	-	-	1e-3	At3g01435	Expressed protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.98	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.11556.1.A1_at	CD401368	-	-	1e-1	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	GmaAffx.5376.10.S1_s_at	BU082924	-	-	2e-10	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.42	59.3	0.98	Gma.5514.1.S1_at	AB060000.1	hypothetical protein LOC547474	-	1e-37	At1g26110	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.98	GmaAffx.43038.1.S1_at	BI969804	-	-	2e+0	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.10829.1.S1_at	CD404695	-	-	1e-4	At2g28360	-	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.1925.1.S1_at	AW310700	-	-	5e-33	At1g69010	BIM2 (BES1-interacting Myc-like protein 2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.5043.1.S1_at	CD407612	-	-	1e-11	At3g08850	RAPTOR1	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.7101.1.S1_at	BI471297	-	-	5e-29	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	Gma.5514.1.S1_x_at	AB060000.1	hypothetical protein LOC547474	-	1e-37	At1g26110	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	GmaAffx.87115.1.S1_at	BI970509	-	-	1e+0	At3g49020	F-box family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	Gma.3626.1.S1_at	BE800416	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.4412.1.S1_x_at	L28002.1	TATA-box binding protein	-	4e-51	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.7733.1.S1_at	BU549841	-	-	3e-7	At3g55070	-	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	GmaAffx.11747.3.A1_at	BG237380	-	-	4e+0	At2g39310	JAL22 (JACALIN-RELATED LECTIN 22)	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.99	Gma.10823.2.S1_at	BM307619	-	-	2e-82	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.8015.1.S1_at	CD402874	-	-	1e-4	At3g19840	FF domain-containing protein / WW domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.5678.2.S1_a_at	CD417564	-	-	2e-70	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.5678.1.S1_at	CD405283	-	-	8e-61	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.98	Gma.1837.1.S1_at	AW309339	-	-	7e-9	At1g71900	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	96.0	GSM182042	Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.1	95.8	GSM201117	Laser capture microdissected (LCM) cotyledon vascular bundle at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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