CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.5393.2.S1_at

Gene name
Homology with Arabidopsis Similar to At4g39220: ATRER1A (HF=5e-10)

Module size 31 genes

NF 0.37

%ile 65.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.82 91.9 0.97 Gma.5393.2.S1_at AW598129 - - 5e-10 At4g39220 ATRER1A O.I. H.G. S.X.
0.60 80.7 0.98 GmaAffx.5376.10.S1_s_at BU082924 - - 2e-10 At2g18600 RUB1-conjugating enzyme, putative O.I. H.G. S.X.
0.50 71.7 0.98 GmaAffx.93465.1.A1_s_at CF809190 - - 3e-1 At5g23340 - O.I. H.G. S.X.
0.48 67.7 0.97 Gma.11929.1.S1_x_at AI437723 HMG-1 like protein gene - 2e-13 At1g20693 HMGB2 (HIGH MOBILITY GROUP B 2) O.I. H.G. S.X.
0.48 67.7 0.99 Gma.10823.2.S1_at BM307619 - - 2e-82 At5g36230 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein O.I. H.G. S.X.
0.48 67.7 0.98 Gma.7528.1.S1_s_at CD415645 - - 5e-10 At3g06720 IMPA-1 (IMPORTIN ALPHA ISOFORM 1) O.I. H.G. S.X.
0.43 60.6 0.98 Gma.8087.1.S1_at BM093904 - - 2e-1 At3g44150 unknown protein O.I. H.G. S.X.
0.43 60.6 0.98 Gma.3967.1.S1_at AW348931 - - 3e-6 At3g01340 protein transport protein SEC13 family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.42 59.3 0.98 Gma.10825.1.S1_at CD407330 - - 1e-3 At3g01435 Expressed protein O.I. H.G. S.X.
0.40 57.1 0.98 Gma.1266.1.S1_a_at BU548161 - - 2e-2 At4g12650 - O.I. H.G. S.X.
0.40 57.1 0.98 Gma.2668.1.S1_at BE822257 - - 4e-6 At5g42520 ATBPC6 O.I. H.G. S.X.
0.39 54.5 0.98 Gma.2835.1.S1_at BI969866 - - 4e-40 At5g23450 ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1) O.I. H.G. S.X.
0.38 53.3 0.98 GmaAffx.37882.1.A1_s_at CD396401 - - 3e-1 At4g09490 RNase H domain-containing protein O.I. H.G. S.X.
0.37 51.7 0.98 Gma.3626.1.S1_at BE800416 - - 5e-38 At2g44100 ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1) O.I. H.G. S.X.
0.36 50.8 0.98 Gma.11129.1.S1_s_at BE657610 - - 6e-119 At3g05840 ATSK12 O.I. H.G. S.X.
0.36 50.8 0.98 GmaAffx.52088.1.S1_at CA850707 - - 1e+1 At5g57510 unknown protein O.I. H.G. S.X.
0.34 47.2 0.98 Gma.1925.1.S1_at AW310700 - - 5e-33 At1g69010 BIM2 (BES1-interacting Myc-like protein 2) O.I. H.G. S.X.
0.33 46.1 0.98 Gma.7733.1.S1_at BU549841 - - 3e-7 At3g55070 - O.I. H.G. S.X.
0.32 43.7 0.98 Gma.933.1.S1_at CD401061 - - 1e-25 At5g54750 transport protein particle (TRAPP) component Bet3, putative O.I. H.G. S.X.
0.32 43.7 0.98 Gma.5686.1.S1_at CA935460 - - 3e-58 At5g47080 CKB1 O.I. H.G. S.X.
0.31 42.2 0.98 GmaAffx.14960.1.S1_s_at BQ630244 EREBP/AP2 transcription factor - 2e+0 At5g34828 - O.I. H.G. S.X.
0.31 42.2 0.98 Gma.3234.1.S1_at CD397450 - - 6e-18 At1g05500 NTMC2T2.1 O.I. H.G. S.X.
0.31 42.2 0.98 Gma.4496.1.A1_at BF219518 - - 1e+1 At5g13810 glutaredoxin family protein O.I. H.G. S.X.
0.30 40.4 0.98 Gma.6614.1.S1_at BU082985 - - 7e-11 At5g63880 VPS20.1 O.I. H.G. S.X.
0.30 40.4 0.98 Gma.18085.1.S1_s_at BI971003 - - 5e-110 At3g26618 ERF1-3 (eukaryotic release factor 1-3) O.I. H.G. S.X.
0.29 39.0 0.98 Gma.933.1.S1_a_at CD401061 - - 1e-25 At5g54750 transport protein particle (TRAPP) component Bet3, putative O.I. H.G. S.X.
0.27 35.7 0.98 Gma.1837.1.S1_at AW309339 - - 7e-9 At1g71900 - O.I. H.G. S.X.
0.26 33.9 0.98 Gma.7498.1.S1_at AW309233 - - 2e-65 At3g25800 PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2) O.I. H.G. S.X.
0.25 32.6 0.97 Gma.16745.1.S1_at CD412707 RAR1 protein - 6e+0 At5g18450 AP2 domain-containing transcription factor, putative O.I. H.G. S.X.
0.25 32.6 0.98 Gma.3441.1.S1_at CD395226 - - 4e-1 At1g14205 ribosomal protein L18 family protein O.I. H.G. S.X.
0.18 22.3 0.98 Gma.3735.2.S1_at BU545833 - - 1e-60 At1g14400 UBC1 (UBIQUITIN CARRIER PROTEIN 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.82	91.9	0.97	Gma.5393.2.S1_at	AW598129	-	-	5e-10	At4g39220	ATRER1A	O.I.	H.G.	S.X.
0.60	80.7	0.98	GmaAffx.5376.10.S1_s_at	BU082924	-	-	2e-10	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.
0.50	71.7	0.98	GmaAffx.93465.1.A1_s_at	CF809190	-	-	3e-1	At5g23340	-	O.I.	H.G.	S.X.
0.48	67.7	0.97	Gma.11929.1.S1_x_at	AI437723	HMG-1 like protein gene	-	2e-13	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.
0.48	67.7	0.99	Gma.10823.2.S1_at	BM307619	-	-	2e-82	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.
0.48	67.7	0.98	Gma.7528.1.S1_s_at	CD415645	-	-	5e-10	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	O.I.	H.G.	S.X.
0.43	60.6	0.98	Gma.8087.1.S1_at	BM093904	-	-	2e-1	At3g44150	unknown protein	O.I.	H.G.	S.X.
0.43	60.6	0.98	Gma.3967.1.S1_at	AW348931	-	-	3e-6	At3g01340	protein transport protein SEC13 family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.
0.42	59.3	0.98	Gma.10825.1.S1_at	CD407330	-	-	1e-3	At3g01435	Expressed protein	O.I.	H.G.	S.X.
0.40	57.1	0.98	Gma.1266.1.S1_a_at	BU548161	-	-	2e-2	At4g12650	-	O.I.	H.G.	S.X.
0.40	57.1	0.98	Gma.2668.1.S1_at	BE822257	-	-	4e-6	At5g42520	ATBPC6	O.I.	H.G.	S.X.
0.39	54.5	0.98	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.
0.38	53.3	0.98	GmaAffx.37882.1.A1_s_at	CD396401	-	-	3e-1	At4g09490	RNase H domain-containing protein	O.I.	H.G.	S.X.
0.37	51.7	0.98	Gma.3626.1.S1_at	BE800416	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.
0.36	50.8	0.98	Gma.11129.1.S1_s_at	BE657610	-	-	6e-119	At3g05840	ATSK12	O.I.	H.G.	S.X.
0.36	50.8	0.98	GmaAffx.52088.1.S1_at	CA850707	-	-	1e+1	At5g57510	unknown protein	O.I.	H.G.	S.X.
0.34	47.2	0.98	Gma.1925.1.S1_at	AW310700	-	-	5e-33	At1g69010	BIM2 (BES1-interacting Myc-like protein 2)	O.I.	H.G.	S.X.
0.33	46.1	0.98	Gma.7733.1.S1_at	BU549841	-	-	3e-7	At3g55070	-	O.I.	H.G.	S.X.
0.32	43.7	0.98	Gma.933.1.S1_at	CD401061	-	-	1e-25	At5g54750	transport protein particle (TRAPP) component Bet3, putative	O.I.	H.G.	S.X.
0.32	43.7	0.98	Gma.5686.1.S1_at	CA935460	-	-	3e-58	At5g47080	CKB1	O.I.	H.G.	S.X.
0.31	42.2	0.98	GmaAffx.14960.1.S1_s_at	BQ630244	EREBP/AP2 transcription factor	-	2e+0	At5g34828	-	O.I.	H.G.	S.X.
0.31	42.2	0.98	Gma.3234.1.S1_at	CD397450	-	-	6e-18	At1g05500	NTMC2T2.1	O.I.	H.G.	S.X.
0.31	42.2	0.98	Gma.4496.1.A1_at	BF219518	-	-	1e+1	At5g13810	glutaredoxin family protein	O.I.	H.G.	S.X.
0.30	40.4	0.98	Gma.6614.1.S1_at	BU082985	-	-	7e-11	At5g63880	VPS20.1	O.I.	H.G.	S.X.
0.30	40.4	0.98	Gma.18085.1.S1_s_at	BI971003	-	-	5e-110	At3g26618	ERF1-3 (eukaryotic release factor 1-3)	O.I.	H.G.	S.X.
0.29	39.0	0.98	Gma.933.1.S1_a_at	CD401061	-	-	1e-25	At5g54750	transport protein particle (TRAPP) component Bet3, putative	O.I.	H.G.	S.X.
0.27	35.7	0.98	Gma.1837.1.S1_at	AW309339	-	-	7e-9	At1g71900	-	O.I.	H.G.	S.X.
0.26	33.9	0.98	Gma.7498.1.S1_at	AW309233	-	-	2e-65	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	O.I.	H.G.	S.X.
0.25	32.6	0.97	Gma.16745.1.S1_at	CD412707	RAR1 protein	-	6e+0	At5g18450	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.
0.25	32.6	0.98	Gma.3441.1.S1_at	CD395226	-	-	4e-1	At1g14205	ribosomal protein L18 family protein	O.I.	H.G.	S.X.
0.18	22.3	0.98	Gma.3735.2.S1_at	BU545833	-	-	1e-60	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 96.4 GSM191088 Soybean_Cotyledon_II2 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1 95.8 GSM191087 Soybean_Cotyledon_II1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1 95.8 GSM184828 Whole Seed at the globular stage, biological replicate 1 GSE6414 Expression data from soybean seed compartments with embryos at the globular stage
3.0 95.6 GSM201122 Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
3.4	96.4	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM184828	Whole Seed at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.0	95.6	GSM201122	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	Gma.5393.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g39220: ATRER1A (HF=5e-10)
Module size	31 genes
NF	0.37
%ile	65.5

Co-expression analysis

Gene ID Gma.5393.2.S1_at Gene name Homology with ArabidopsisSimilar to At4g39220: ATRER1A (HF=5e-10) Module size 31 genes NF 0.37 %ile 65.5

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Gma.5393.2.S1_at

Gene name
Homology with Arabidopsis Similar to At4g39220: ATRER1A (HF=5e-10)

Module size 31 genes

NF 0.37

%ile 65.5

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays