Co-expression analysis

Gene ID	Gma.5350.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g60460: sec61beta family protein (HF=6e-18)
Module size	15 genes
NF	0.48
%ile	79.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.8	0.97	Gma.5350.1.S1_s_at	AW351218	-	-	6e-18	At5g60460	sec61beta family protein	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.97	Gma.2904.1.S1_at	BG651469	-	-	1e-1	At3g43520	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.8	0.98	GmaAffx.91136.1.S1_s_at	CF806861	-	-	2e-36	At5g19510	elongation factor 1B alpha-subunit 2 (eEF1Balpha2)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.98	Gma.7245.1.S1_at	AW351310	-	-	3e-35	At4g35490	MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.18017.2.S1_s_at	CD406719	-	-	6e-21	At1g69620	RPL34 (RIBOSOMAL PROTEIN L34)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	GmaAffx.90455.1.A1_s_at	CF806180	-	-	3e-26	At5g12110	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	O.I.	H.G.	S.X.	Please select
0.54	74.8	0.98	GmaAffx.80265.1.S1_at	BU761569	-	-	3e-31	At1g17350	auxin-induced-related / indole-3-acetic acid induced-related	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.98	Gma.11048.1.S1_at	AW309369	-	-	2e-40	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.46	65.5	0.98	Gma.4710.1.S1_x_at	AW317168	-	-	2e-21	At5g18380	40S ribosomal protein S16 (RPS16C)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.11262.1.S1_at	CD415864	-	-	2e-27	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	Gma.11262.1.S1_x_at	CD415864	-	-	2e-27	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	GmaAffx.91182.1.S1_s_at	CF806907	-	-	6e-83	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.1912.2.S1_a_at	BM091939	-	-	5e-19	At5g53400	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.98	Gma.11295.2.S1_x_at	BE209656	-	-	2e-17	At5g56670	40S ribosomal protein S30 (RPS30C)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	GmaAffx.91135.1.S1_s_at	CF806860	-	-	4e-13	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	99.2	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
9.4	99.2	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.9	99.2	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.9	99.2	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.8	99.1	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.8	99.1	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
8.7	99.1	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
8.4	99.1	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
7.8	99.0	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
7.2	98.9	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
5.6	98.3	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
5.5	98.3	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
3.1	95.8	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.1	95.8	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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