Co-expression analysis

Gene ID Gma.5237.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g55960: NLI interacting factor (NIF) family protein (HF=8e-10)
Module size 6 genes
NF 0.53
%ile 83.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.99Gma.5237.1.S1_atBQ298220--8e-10At3g55960NLI interacting factor (NIF) family proteinO.I.H.G.S.X.
0.5576.30.99Gma.10860.1.S1_a_atAW350087--9e-13At4g19860lecithin:cholesterol acyltransferase family protein / LACT family proteinO.I.H.G.S.X.
0.5071.70.99Gma.15087.1.S1_atBI968833--5e+0At1g01530AGL28 (AGAMOUS-LIKE 28)O.I.H.G.S.X.
0.5071.70.99Gma.12076.1.S1_atCD410539--1e-45At4g31860protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.3346.10.99GmaAffx.661.1.S1_atBI969786--2e+0At1g67080ABA4 (abscisic acid (ABA)-deficient 4)O.I.H.G.S.X.
0.2329.90.99Gma.1651.1.S1_atCD395076--4e-1At3g17880ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.596.6GSM2931263_C038.1O.R9O1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.496.4GSM29310520_C054.1O.R9O3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29289065_C202.1L.R9L1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage