Co-expression analysis

Gene ID Gma.5049.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g65250: unknown protein (HF=8e-8)
Module size 24 genes
NF 0.14
%ile 35.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.80.93Gma.5049.1.S1_atBI425927--8e-8At5g65250unknown proteinO.I.H.G.S.X.
0.4259.30.96Gma.720.1.S1_atCD396523--2e-31At4g26670mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinO.I.H.G.S.X.
0.4057.10.96Gma.8774.1.A1_atBU545200--1e-3At3g21580cobalt ion transmembrane transporterO.I.H.G.S.X.
0.3650.80.96Gma.13063.1.A1_atCD403000--9e-8At4g08280-O.I.H.G.S.X.
0.3243.70.97Gma.5276.1.S1_atBM731770--8e-36At4g13430IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1)O.I.H.G.S.X.
0.2939.00.96Gma.7729.2.S1_atCD403163--4e-27At2g43950OEP37O.I.H.G.S.X.
0.2939.00.95Gma.13368.1.S1_atCD406664--1e+0At3g60910catalytic/ methyltransferaseO.I.H.G.S.X.
0.2228.10.96GmaAffx.81837.1.S1_atCD410469--5e-81At4g17040ATP-dependent Clp protease proteolytic subunit, putativeO.I.H.G.S.X.
0.1923.70.97Gma.16782.1.S1_atCD412337--2e-41At1g29880glycyl-tRNA synthetase / glycine--tRNA ligaseO.I.H.G.S.X.
0.1923.70.95Gma.9908.1.S1_atCD399899--8e-59At1g63940monodehydroascorbate reductase, putativeO.I.H.G.S.X.
0.1822.30.96Gma.6863.1.S1_atBQ628209--2e-35At2g07050CAS1 (cycloartenol synthase 1)O.I.H.G.S.X.
0.1822.30.96Gma.18065.1.S1_atBG508842--3e+0At5g60440AGL62 (Agamous-like 62)O.I.H.G.S.X.
0.1822.30.97Gma.7906.1.S1_atBF716040--7e-9At1g63610unknown proteinO.I.H.G.S.X.
0.1417.50.96Gma.14116.1.A1_atCD399982--2e-2At3g11750dihydroneopterin aldolase, putativeO.I.H.G.S.X.
0.1417.50.96Gma.3055.1.S1_atBM307497--3e-33At2g20690lumazine-binding family proteinO.I.H.G.S.X.
0.1215.10.96Gma.3780.1.S1_atBG237497--3e-1At1g55000peptidoglycan-binding LysM domain-containing proteinO.I.H.G.S.X.
0.1013.00.96Gma.1442.1.S1_s_atCD407234--1e+0At5g12240unknown proteinO.I.H.G.S.X.
0.1013.00.96GmaAffx.35595.1.S1_atBM523823--5e-12At4g34960peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeO.I.H.G.S.X.
0.1013.00.95Gma.16525.1.A1_atCD397844--4e-4At1g12350ATCOAB (4-phospho-panto-thenoylcysteine synthetase)O.I.H.G.S.X.
0.0912.00.96Gma.10221.1.A1_atBI970020--3e+0At1g66235unknown proteinO.I.H.G.S.X.
0.0912.00.95GmaAffx.86958.1.A1_atBI968079--3e+0At5g18362unknown proteinO.I.H.G.S.X.
0.0710.20.95Gma.2074.2.A1_atAW350766--3e+0At5g15581unknown proteinO.I.H.G.S.X.
0.0710.20.95GmaAffx.5686.1.S1_atBQ473205--5e-10At1g63900zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.058.00.95GmaAffx.779.1.S1_atBE822359--4e-20At5g41760nucleotide-sugar transporter family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.998.5GSM209590susceptible_48hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
5.598.3GSM209589resistant_48hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
5.298.1GSM209581susceptible_48hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
5.098.0GSM209598resistant_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.998.0GSM245938Leaf_LCO treated_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
4.998.0GSM209573mock_0hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.897.9GSM209599susceptible_48hours_rep3GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.897.9GSM238050Soybean-Mandarin-6-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.897.9GSM209582mock_0hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.697.7GSM238048Soybean-Mandarin-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.597.7GSM184826Young trifoliate leaf, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.597.7GSM238051Soybean-Mandarin-7-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.397.5GSM238047Soybean-Mandarin-1-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.397.5GSM245935Leaf_Water Control_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
4.297.4GSM238034Soybean-2601R-6-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.297.4GSM238030Soybean-2601R-2-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.297.4GSM238049Soybean-Mandarin-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.197.3GSM209577susceptible_12hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
4.097.2GSM237070Soy_non-shoot apical meristem2GSE10607Genome-wide analysis of gene expression in the soybean shoot apical meristemLink to GEO
4.097.2GSM245937Leaf_LCO treated_Rep 2_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
4.097.2GSM238059Soybean-S03W4-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
4.097.2GSM209580resistant_48hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.997.1GSM238061Soybean-S03W4-5-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
3.997.1GSM245936Leaf_LCO treated_Rep 1_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
3.897.0GSM245933Leaf_Water Control_Rep 1_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
3.897.0GSM245934Leaf_Water Control_Rep 2_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
3.897.0GSM238056Soybean-PS46R-5-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
3.796.8GSM184827Young trifoliate leaf, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
3.796.8GSM238032Soybean-2601R-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
3.696.7GSM209576resistant_12hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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