Co-expression analysis

Gene ID Gma.5040.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g61140: DEAD box RNA helicase, putative (HF=1e-7)
Module size 6 genes
NF 0.42
%ile 72.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7187.80.98Gma.5040.1.S1_atBI970582--1e-7At5g61140DEAD box RNA helicase, putativeO.I.H.G.S.X.
0.5374.20.98Gma.3926.1.S1_atBE801733--2e-38At1g04080PRP39O.I.H.G.S.X.
0.5071.70.98Gma.6024.1.S1_s_atCD397288--5e-1At5g41290receptor-like protein kinase-relatedO.I.H.G.S.X.
0.3650.80.98Gma.3765.1.S1_atBI892781--2e-10At1g59820ALA3 (Aminophospholipid ATPase3)O.I.H.G.S.X.
0.2735.70.98GmaAffx.51562.1.S1_atBE822242--4e-1At5g67390unknown proteinO.I.H.G.S.X.
0.2329.90.99Gma.2802.1.S1_atCD396311--2e-29At3g06810IBR3 (IBA-RESPONSE 3)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.796.8GSM29237347_C104.1F.R9F3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29310520_C054.1O.R9O3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM2931263_C038.1O.R9O1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29227822_C090.1E.R9E3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29321595_C050.1O.SLO3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage