Co-expression analysis

Gene ID	Gma.5038.3.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g63380: 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (HF=2e-9)
Module size	6 genes
NF	0.09
%ile	27.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.96	Gma.5038.3.S1_s_at	AW830151	-	-	2e-9	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	GmaAffx.24396.1.A1_at	BU547464	-	-	1e-16	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	Gma.7259.2.S1_at	BQ610944	-	-	7e+0	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.98	GmaAffx.74451.1.A1_at	BU548027	-	-	5e-9	At3g10410	scpl49 (serine carboxypeptidase-like 49)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the maize gene, Zm.777.1.S1_a_at, orthologous to the query gene, Gma.5038.3.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	Zm.777.1.S1_a_at	At5g63380	hypothetical protein LOC100272376	-	4e-8	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	ZmAffx.774.1.A1_at	At5g63380	hypothetical protein LOC100279501	-	2e+0	At2g41000	heat shock protein binding	O.I.	H.G.	S.X.	Please select
0.64	81.7	Zm.2615.1.S1_at	At5g63380	hypothetical protein LOC100279288	-	5e-5	At3g54180	CDKB1	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.2763.1.S1_at	At5g63380	hypothetical protein LOC100191545	-	9e-7	At1g19710	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	ZmAffx.1299.1.S1_at	At5g63380	-	-	0	Atmg00580	-	O.I.	H.G.	S.X.	Please select
0.39	45.6	ZmAffx.1489.1.S1_at	At5g63380	-	-	0	Atcg00680	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	Zm.8664.1.A1_at	At5g63380	hypothetical protein LOC100274639	-	2e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	O.I.	H.G.	S.X.	Please select
0.29	28.1	Zm.6275.1.S1_a_at	At5g63380	benzoxazin6	-	7e-1	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	O.I.	H.G.	S.X.	Please select
0.25	21.3	Zm.14692.1.A1_s_at	At5g63380	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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