Co-expression analysis

Gene ID	Gma.5038.3.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g63380: 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (HF=2e-9)
Module size	6 genes
NF	0.09
%ile	27.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.96	Gma.5038.3.S1_s_at	AW830151	-	-	2e-9	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	GmaAffx.24396.1.A1_at	BU547464	-	-	1e-16	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	Gma.7259.2.S1_at	BQ610944	-	-	7e+0	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.98	GmaAffx.74451.1.A1_at	BU548027	-	-	5e-9	At3g10410	scpl49 (serine carboxypeptidase-like 49)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1610552_at, orthologous to the query gene, Gma.5038.3.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	84.7	1610552_at	At5g63380	-	-	5e-10	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1608633_s_at	At5g63380	hypothetical protein LOC100253479	-	1e-26	At5g62740	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1621554_s_at	At5g63380	similar to Os03g0670700	-	4e-6	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1616828_s_at	At5g63380	similar to Os03g0670700	-	1e+0	At4g38680	GRP2 (GLYCINE RICH PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1616273_at	At5g63380	hypothetical protein LOC100252917	-	6e+0	At5g49410	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	1613552_at	At5g63380	hypothetical LOC100243703	-	1e-3	At5g58700	phosphoinositide-specific phospholipase C family protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	1618421_at	At5g63380	hypothetical protein LOC100252493	-	6e-6	At3g57560	aspartate/glutamate/uridylate kinase family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1619104_s_at	At5g63380	hypothetical protein LOC100242520	-	1e-41	At3g23940	dehydratase family	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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