Co-expression analysis

Gene ID Gma.5038.3.S1_s_at
Gene name
Homology with ArabidopsisSimilar to At5g63380: 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (HF=2e-9)
Module size 6 genes
NF 0.09
%ile 27.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.96Gma.5038.3.S1_s_atAW830151--2e-9At5g633804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinO.I.H.G.S.X.
0.1923.70.98GmaAffx.24396.1.A1_atBU547464--1e-16At3g55260HEXO1 (BETA-HEXOSAMINIDASE 1)O.I.H.G.S.X.
0.1013.00.98GmaAffx.59019.1.S1_atAW133348--1e-136Atmg00160-O.I.H.G.S.X. peroxidase 1, cytosolic /// L-ascorbate peroxidase 2-6e-22At1g07890APX1 (ascorbate peroxidase 1)O.I.H.G.S.X. (Conserved peptide upstream open reading frame 24)O.I.H.G.S.X. (serine carboxypeptidase-like 49)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.13512.1.S1_s_at, orthologous to the query gene, Gma.5038.3.S1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5582.2PtpAffx.13512.1.S1_s_atAt5g633804-coumarate-coa ligase-9e-12At5g633804-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinO.I.H.G.S.X.
0.6791.1PtpAffx.153609.2.A1_atAt5g63380hypothetical protein-2e-24At4g25630FIB2 (FIBRILLARIN 2)O.I.H.G.S.X.
0.6187.0PtpAffx.19666.2.A1_a_atAt5g63380hypothetical protein-6e-2At1g09795ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2)O.I.H.G.S.X.
0.6086.0Ptp.598.1.A1_a_atAt5g63380hypothetical protein-4e-1At3g16680DNA binding / DNA-directed RNA polymeraseO.I.H.G.S.X.
0.4067.0Ptp.7817.1.A1_atAt5g63380hypothetical protein-9e-5At5g08695nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.3762.3PtpAffx.50465.1.A1_atAt5g63380thioredoxin y-2e-27At1g76760ATY1 (ARABIDOPSIS THIOREDOXIN Y1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

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