Co-expression analysis

Gene ID	Gma.5038.3.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g63380: 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein (HF=2e-9)
Module size	6 genes
NF	0.09
%ile	27.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.96	Gma.5038.3.S1_s_at	AW830151	-	-	2e-9	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	GmaAffx.24396.1.A1_at	BU547464	-	-	1e-16	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	O.I.	H.G.	S.X.	Please select
0.10	13.0	0.98	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	O.I.	H.G.	S.X.	Please select
0.06	9.0	0.98	Gma.7259.2.S1_at	BQ610944	-	-	7e+0	At5g45428	CPuORF24 (Conserved peptide upstream open reading frame 24)	O.I.	H.G.	S.X.	Please select
0.05	8.0	0.98	GmaAffx.74451.1.A1_at	BU548027	-	-	5e-9	At3g10410	scpl49 (serine carboxypeptidase-like 49)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig16738_at, orthologous to the query gene, Gma.5038.3.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.7	Contig16738_at	At5g63380	-	-	2e-3	At1g20510	OPCL1 (OPC-8:0 COA LIGASE1)	O.I.	H.G.	S.X.	Please select
0.48	63.2	HVSMEf0020J20f2_x_at	At5g63380	-	-	2e+0	At4g13540	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig6781_at	At5g63380	-	-	7e+0	At5g20650	COPT5	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig12160_at	At5g63380	-	-	2e-7	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.41	53.9	HV_CEb0015K08r2_at	At5g63380	-	-	5e+0	At3g48840	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig7790_at	At5g63380	-	-	3e-11	At2g34160	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig12191_s_at	At5g63380	-	-	7e-5	At5g58390	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig5708_at	At5g63380	-	-	1e+0	At2g47280	pectinesterase	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig16692_at	At5g63380	-	-	6e-19	At1g14610	TWN2 (TWIN 2)	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig3967_s_at	At5g63380	-	-	6e-16	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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