CoP: Co-expressed Biological Processes

Co-expression analysis

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.59	79.5	0.98	Gma.4932.1.S1_at	BI970670	NDX1 homeobox protein	-	2e-5	At4g03090	sequence-specific DNA binding / transcription factor	O.I.	H.G.	S.X.
0.82	91.9	0.98	Gma.7179.1.S1_at	AW348714	-	-	4e+0	At3g53530	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.59	79.5	0.98	Gma.8167.1.S1_at	BI945308	-	-	5e+0	At4g17160	ATRABB1A (ARABIDOPSIS RAB GTPASE HOMOLOG B1A)	O.I.	H.G.	S.X.
0.50	71.7	0.98	Gma.8059.1.S1_at	AW310669	-	-	2e+0	At4g40050	signal transducer	O.I.	H.G.	S.X.
0.50	71.7	0.98	GmaAffx.51562.1.S1_at	BE822242	-	-	4e-1	At5g67390	unknown protein	O.I.	H.G.	S.X.
0.48	67.7	0.98	Gma.5692.1.S1_at	BM522647	-	-	3e-5	At5g48640	cyclin family protein	O.I.	H.G.	S.X.
0.48	67.7	0.98	Gma.8823.2.S1_at	BU765654	-	-	1e-6	At5g45560	pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein	O.I.	H.G.	S.X.
0.46	65.5	0.98	Gma.7581.1.S1_at	BI969748	-	-	1e-2	At5g13300	SFC (SCARFACE)	O.I.	H.G.	S.X.
0.46	65.5	0.98	Gma.3926.1.S1_at	BE801733	-	-	2e-38	At1g04080	PRP39	O.I.	H.G.	S.X.

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM293215	95_C050.1O.SLO3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292373	47_C104.1F.R9F3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Gene ID	Gma.4932.1.S1_at
Gene name	NDX1 homeobox protein
Homology with Arabidopsis	Similar to At4g03090: sequence-specific DNA binding / transcription factor (HF=2e-5)
Module size	9 genes
NF	0.56
%ile	86.8