Co-expression analysis

Gene ID Gma.4583.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g12860: DiT1 (dicarboxylate transporter 1) (HF=3e-10)
Module size 27 genes
NF 0.46
%ile 77.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7589.50.91Gma.4583.1.A1_atCD392707--3e-10At5g12860DiT1 (dicarboxylate transporter 1)O.I.H.G.S.X.
0.6684.00.94Gma.8707.1.S1_a_atCD395301--5e-11At1g15140oxidoreductase NAD-binding domain-containing proteinO.I.H.G.S.X.
0.6583.80.95GmaAffx.87753.1.S1_atBG156634--6e-34At2g41680NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C)O.I.H.G.S.X.
0.6382.90.94Gma.17711.1.S1_atCD394545--1e-7At2g01290ribose-5-phosphate isomeraseO.I.H.G.S.X.
0.5678.20.94Gma.4362.1.S1_atCD405619--2e-59At3g116302-cys peroxiredoxin, chloroplast (BAS1)O.I.H.G.S.X.
0.5678.20.94GmaAffx.45130.1.S1_atBQ298212--4e-1At1g79220mitochondrial transcription termination factor family protein / mTERF family proteinO.I.H.G.S.X.
0.5576.30.96Gma.11178.1.S1_atCD395248--1e-7At1g29070ribosomal protein L34 family proteinO.I.H.G.S.X.
0.5374.20.96Gma.7972.1.S1_atCD399265--2e+0At4g24310unknown proteinO.I.H.G.S.X.
0.5273.10.94Gma.3218.2.S1_atCD398107--4e-8At5g58250unknown proteinO.I.H.G.S.X.
0.5172.30.96Gma.1956.2.S1_a_atBI973840--2e-2At5g25600-O.I.H.G.S.X.
0.5172.30.95Gma.5851.3.S1_atCD397657--1e-11At1g74970RPS9 (RIBOSOMAL PROTEIN S9)O.I.H.G.S.X.
0.5071.70.93GmaAffx.80986.1.S1_s_atBU089770--4e-47At5g61410RPEO.I.H.G.S.X.
0.4766.60.95Gma.13383.1.S1_s_atCD416391--2e+0At4g18850unknown proteinO.I.H.G.S.X.
0.4665.50.93GmaAffx.78287.2.S1_atBM567777--8e-2At1g16225-O.I.H.G.S.X.
0.4259.30.94Gma.6218.1.S1_x_atCD408141--2e+0At2g04170meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.4158.10.93Gma.17750.1.A1_s_atAI443533--3e+0At2g06925PLA2-ALPHAO.I.H.G.S.X.
0.4158.10.95Gma.4606.1.S1_atBF426114--9e-12At5g13510ribosomal protein L10 family proteinO.I.H.G.S.X.
0.4158.10.94Gma.11183.1.S1_atCD396098Putative plastid triose phophate translocator mRNA, partial cds; nuclear gene for plastid product-2e-88At5g46110APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)O.I.H.G.S.X.
0.4057.10.94Gma.1587.1.S1_atCD413968--3e-2At5g511104-alpha-hydroxytetrahydrobiopterin dehydrataseO.I.H.G.S.X.
0.4057.10.94Gma.3419.1.S1_atCD392345--4e-17At3g25920RPL15O.I.H.G.S.X.
0.3751.70.95Gma.10730.1.S1_atCD404447--1e-16At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.3751.70.95Gma.3128.1.S1_atBF423969--1e-100At2g21170TIM (TRIOSEPHOSPHATE ISOMERASE)O.I.H.G.S.X.
0.3751.70.95GmaAffx.64090.1.S1_atAW203536--2e-20At4g29060emb2726 (embryo defective 2726)O.I.H.G.S.X.
0.3751.70.95Gma.8393.1.A1_a_atCD393466--5e+0At2g04790unknown proteinO.I.H.G.S.X.
0.3650.80.93GmaAffx.93517.1.S1_s_atCF809242--1e-36At5g47110lil3 protein, putativeO.I.H.G.S.X.
0.2735.70.95Gma.4423.2.S1_a_atBU081159--8e-75At5g36700PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)O.I.H.G.S.X.
0.2633.90.94Gma.1666.1.S1_atBG508327--8e-37At4g29060emb2726 (embryo defective 2726)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.299.3GSM238030Soybean-2601R-2-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
10.099.3GSM238061Soybean-S03W4-5-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
9.399.2GSM245938Leaf_LCO treated_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
9.399.2GSM238034Soybean-2601R-6-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.999.2GSM238043Soybean-Bayfield-5-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.799.1GSM238032Soybean-2601R-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.699.1GSM209581susceptible_48hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
8.599.1GSM238039Soybean-Bayfield-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.499.1GSM238036Soybean-Bayfield-1-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.499.1GSM238060Soybean-S03W4-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.299.0GSM238041Soybean-Bayfield-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.299.0GSM238048Soybean-Mandarin-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.199.0GSM238053Soybean-PS46R-2-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.199.0GSM238050Soybean-Mandarin-6-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.199.0GSM238059Soybean-S03W4-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.199.0GSM238052Soybean-PS46R-1-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.199.0GSM238056Soybean-PS46R-5-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
8.099.0GSM209580resistant_48hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
7.999.0GSM238031Soybean-2601R-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.899.0GSM238049Soybean-Mandarin-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.799.0GSM245937Leaf_LCO treated_Rep 2_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
7.799.0GSM245935Leaf_Water Control_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO
7.799.0GSM238033Soybean-2601R-5-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.698.9GSM238047Soybean-Mandarin-1-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.698.9GSM238057Soybean-S03W4-1-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.698.9GSM238054Soybean-PS46R-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.698.9GSM238058Soybean-S03W4-2-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.598.9GSM238051Soybean-Mandarin-7-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.598.9GSM238038Soybean-Bayfield-2-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeansLink to GEO
7.298.9GSM245936Leaf_LCO treated_Rep 1_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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