Co-expression analysis

Gene ID Gma.4531.3.S1_at
Gene name
Homology with ArabidopsisSimilar to At4g08950: EXO (EXORDIUM) (HF=3e-3)
Module size 13 genes
NF 0.03
%ile 14.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8993.50.81Gma.4531.3.S1_atBE059056--3e-3At4g08950EXO (EXORDIUM)O.I.H.G.S.X.
0.3548.60.85Gma.4531.1.A1_a_atBI701255--3e+0At5g5460050S ribosomal protein L24, chloroplast (CL24)O.I.H.G.S.X.
0.0710.20.91GmaAffx.5992.1.A1_atBU549357--1e-24At5g01710-O.I.H.G.S.X.
0.069.00.85GmaAffx.69994.1.S1_atCD417025--3e-4At4g08950EXO (EXORDIUM)O.I.H.G.S.X.
0.069.00.93GmaAffx.38434.1.S1_atCA936792--3e-2At3g25030zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.058.00.87Gma.6758.1.S1_s_atBU760603--8e-5At2g41420proline-rich family proteinO.I.H.G.S.X.
0.058.00.93Gma.13075.1.S1_atCD405748--2e-28At1g09160protein phosphatase 2C-related / PP2C-relatedO.I.H.G.S.X.
0.047.00.91Gma.1337.1.S1_s_atCA802041--9e-1At5g11740AGP15 (ARABINOGALACTAN PROTEIN 15)O.I.H.G.S.X.
0.035.80.90Gma.2885.1.S1_atBU764174--3e-6At2g02360AtPP2-B10 (Phloem protein 2-B10)O.I.H.G.S.X.
0.035.80.91Gma.4164.1.S1_atBI968666MYB transcription factor MYB112-3e-5At4g37260MYB73 (MYB DOMAIN PROTEIN 73)O.I.H.G.S.X.
0.024.50.93GmaAffx.77372.1.S1_atBG791150--3e+0At3g11210GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.013.40.86Gma.3990.1.S1_s_atBQ453423--2e-1At2g22300SR1 (SIGNAL RESPONSIVE 1)O.I.H.G.S.X.
0.013.40.87Gma.4632.1.A1_atAW309572--5e-6At1g12990glycosyl transferase family 17 proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.298.6GSM147935Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
6.098.5GSM182034Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.798.4GSM182033Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.698.3GSM147937Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.598.3GSM182032Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.598.3GSM191078Soybean_Cotyledon_SUS2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.498.2GSM191077Soybean_Cotyledon_SUS1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.398.2GSM182044Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.398.2GSM191081Soybean_Cotyledon_EN1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.298.1GSM191082Soybean_Cotyledon_EN2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.298.1GSM191088Soybean_Cotyledon_II2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.198.1GSM147950Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.198.1GSM191087Soybean_Cotyledon_II1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.098.0GSM147944Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.098.0GSM182041Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.998.0GSM182038Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.897.9GSM147936Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.897.9GSM147953Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.897.9GSM182042Laser capture microdissected (LCM) hilum at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.797.8GSM147951Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.797.8GSM182043Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.697.7GSM147947Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.697.7GSM147943Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.697.7GSM191083Soybean_Cotyledon_EPD1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.697.7GSM147942Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.597.7GSM147934Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
4.597.7GSM182048Whole Seed at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.597.7GSM182037Laser capture microdissected (LCM) endothelium at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
4.497.6GSM201105Laser capture microdissected (LCM) axis shoot meristem at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.497.6GSM147948Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage