CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.4470.1.S1_s_at

Gene name
Homology with Arabidopsis Similar to At5g41401: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.40

%ile 70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 78.2 0.95 Gma.4470.1.S1_s_at AW156251 - - 2e+0 At5g41401 unknown protein O.I. H.G. S.X.
0.57 78.8 0.95 GmaAffx.89916.1.S1_s_at CF805641 - - 4e-3 At5g61830 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.40 57.1 0.96 Gma.6719.4.S1_at BU762353 - - 2e+0 At5g26848 unknown protein O.I. H.G. S.X.
0.36 50.8 0.96 GmaAffx.66195.1.S1_at AI988572 - - 1e-12 At5g11950 protein homodimerization O.I. H.G. S.X.
0.33 46.1 0.97 GmaAffx.91496.1.S1_s_at CF807221 - - 4e+0 At3g17300 - O.I. H.G. S.X.
0.20 25.1 0.95 GmaAffx.93301.2.S1_s_at CF808497 2'-hydroxydihydrodaidzein reductase - 1e-11 At4g05050 UBQ11 (UBIQUITIN 11) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.2 96.0 GSM293553 67_3017.2A.R9A3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.111679.2.S1_at, orthologous to the query gene, Gma.4470.1.S1_s_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.1 TaAffx.111679.2.S1_at At5g41401 - - 1e-9 At4g35100 PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3) O.I. H.G. S.X.
0.75 89.8 Ta.13051.1.S1_at At5g41401 - - 9e-2 At4g24026 unknown protein O.I. H.G. S.X.
0.70 87.2 Ta.8765.1.A1_x_at At5g41401 - - 3e+0 At3g03405 - O.I. H.G. S.X.
0.69 86.9 Ta.15206.1.S1_at At5g41401 - - 3e-1 At2g22320 unknown protein O.I. H.G. S.X.
0.69 86.9 Ta.8195.2.S1_at At5g41401 - - 2e-6 At1g68010 HPR O.I. H.G. S.X.
0.67 86.3 TaAffx.36684.1.A1_at At5g41401 - - 2e-1 At5g14690 unknown protein O.I. H.G. S.X.
0.64 83.6 TaAffx.105889.1.S1_s_at At5g41401 - - 1e+0 At3g61260 DNA-binding family protein / remorin family protein O.I. H.G. S.X.
0.62 82.3 Ta.10327.2.S1_a_at At5g41401 - - 3e+0 At2g04550 IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5) O.I. H.G. S.X.
0.59 79.8 Ta.26661.1.A1_at At5g41401 - - 4e-10 At5g19760 dicarboxylate/tricarboxylate carrier (DTC) O.I. H.G. S.X.
0.56 78.6 TaAffx.5547.1.S1_at At5g41401 - - 4e+0 At5g50740 metal ion binding O.I. H.G. S.X.
0.50 72.4 Ta.23299.2.S1_at At5g41401 - - 9e-1 At5g06380 unknown protein O.I. H.G. S.X.
0.50 72.4 TaAffx.113756.1.S1_at At5g41401 - - 1e-3 At5g04250 OTU-like cysteine protease family protein O.I. H.G. S.X.
0.48 69.0 Ta.8368.2.S1_at At5g41401 - - 2e-4 At5g61640 PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1) O.I. H.G. S.X.
0.47 67.9 TaAffx.56934.1.S1_at At5g41401 - - 4e+0 At2g17695 unknown protein O.I. H.G. S.X.
0.44 64.5 TaAffx.107754.1.S1_at At5g41401 - - 1e+0 At2g21780 unknown protein O.I. H.G. S.X.
0.42 60.9 TaAffx.81077.1.S1_s_at At5g41401 - - 5e-3 At3g20900 unknown protein O.I. H.G. S.X.
0.28 39.2 TaAffx.38217.1.S1_at At5g41401 - - 7e+0 At5g11690 ATTIM17-3 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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