Co-expression analysis

Gene ID	Gma.4470.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g41401: unknown protein (HF=2e+0)
Module size	6 genes
NF	0.40
%ile	70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.2	0.95	Gma.4470.1.S1_s_at	AW156251	-	-	2e+0	At5g41401	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.95	GmaAffx.89916.1.S1_s_at	CF805641	-	-	4e-3	At5g61830	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.96	Gma.6719.4.S1_at	BU762353	-	-	2e+0	At5g26848	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.96	GmaAffx.66195.1.S1_at	AI988572	-	-	1e-12	At5g11950	protein homodimerization	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	GmaAffx.91496.1.S1_s_at	CF807221	-	-	4e+0	At3g17300	-	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.95	GmaAffx.93301.2.S1_s_at	CF808497	2'-hydroxydihydrodaidzein reductase	-	1e-11	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	96.0	GSM293553	67_3017.2A.R9A3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the barley gene, EBpi01_SQ003_I06_at, orthologous to the query gene, Gma.4470.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	EBpi01_SQ003_I06_at	At5g41401	-	-	8e-1	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig16692_at	At5g41401	-	-	6e-19	At1g14610	TWN2 (TWIN 2)	O.I.	H.G.	S.X.	Please select
0.53	69.7	HV_CEb0015K08r2_at	At5g41401	-	-	5e+0	At3g48840	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig17901_at	At5g41401	-	-	6e+0	At4g10300	-	O.I.	H.G.	S.X.	Please select
0.32	40.3	HV_CEb0015L05r2_at	At5g41401	-	-	3e-4	At5g48790	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig3967_s_at	At5g41401	-	-	6e-16	At5g47040	LON2 (LON PROTEASE 2)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig12292_at	At5g41401	-	-	1e+1	At5g25475	DNA binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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