Co-expression analysis

Gene ID	Gma.4269.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g27450: APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) (HF=3e-19)
Module size	6 genes
NF	0.56
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.97	GmaAffx.91300.1.S1_s_at	CF805768	-	-	9e-67	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.4310.1.S1_at	BE822674	chorismate synthase	-	3e-58	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	GmaAffx.88920.1.S1_s_at	CK605763	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1622855_at, orthologous to the query gene, Gma.4269.3.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.0	1622855_at	At1g27450	hypothetical protein LOC100245536	-	4e-42	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.43	61.5	1614649_s_at	At1g27450	hypothetical protein LOC100253897	-	1e-29	At4g00170	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1617155_at	At1g27450	hypothetical protein LOC100244863	-	7e-31	At1g26940	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1613303_at	At1g27450	similar to plectin-related	-	3e-16	At2g26770	plectin-related	O.I.	H.G.	S.X.	Please select
0.40	57.7	1616927_at	At1g27450	hypothetical protein LOC100241961	-	2e-15	At3g51850	CPK13	O.I.	H.G.	S.X.	Please select
0.39	54.9	1621300_at	At1g27450	hypothetical protein LOC100244618	-	4e+0	At4g23420	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1619735_at	At1g27450	hypothetical protein LOC100258926	-	1e-34	At2g15430	NRPB3	O.I.	H.G.	S.X.	Please select
0.38	53.6	1607911_at	At1g27450	hypothetical protein LOC100243725	-	3e-38	At1g75330	OTC (ORNITHINE CARBAMOYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1611967_at	At1g27450	hypothetical protein LOC100257282	-	2e+0	At5g46915	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	1615954_at	At1g27450	hypothetical protein LOC100246515	-	8e-6	At3g07510	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1617566_at	At1g27450	hypothetical protein LOC100247823	-	1e+0	At3g17310	methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1613901_at	At1g27450	hypothetical protein LOC100254714	-	2e-2	At3g03340	UNE6 (unfertilized embryo sac 6)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1610969_at	At1g27450	hypothetical protein LOC100261996	-	2e-18	At1g71310	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1617195_s_at	At1g27450	hypothetical protein LOC100262509	-	1e-26	At1g09590	60S ribosomal protein L21 (RPL21A)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1620466_at	At1g27450	hypothetical protein LOC100246357	-	7e-27	At5g56280	CSN6A	O.I.	H.G.	S.X.	Please select
0.32	43.1	1616013_at	At1g27450	hypothetical protein LOC100258780	-	5e-9	At4g40100	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.32	43.1	1613728_at	At1g27450	hypothetical protein LOC100243984	-	1e+0	At5g11260	HY5 (ELONGATED HYPOCOTYL 5)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1613735_at	At1g27450	hypothetical protein LOC100264792	-	4e-64	At2g32730	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.31	41.3	1613700_at	At1g27450	hypothetical protein LOC100243012	-	3e-29	At5g23290	PDF5 (PREFOLDIN 5)	O.I.	H.G.	S.X.	Please select
0.30	39.4	1619540_at	At1g27450	hypothetical protein LOC100263170	-	1e-4	At5g54430	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1621174_at	At1g27450	hypothetical protein LOC100248177	-	5e-19	At1g33490	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1613308_at	At1g27450	hypothetical protein LOC100247694	-	8e-14	At5g18580	FASS (FASS 1)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1614659_at	At1g27450	hypothetical protein LOC100260731	-	5e-25	At3g57050	CBL (cystathionine beta-lyase)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1612599_at	At1g27450	hypothetical protein LOC100265811	-	3e-4	At2g25720	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1619032_at	At1g27450	hypothetical LOC100255424	-	7e-37	At4g27120	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1613189_at	At1g27450	hypothetical protein LOC100263471	-	8e-2	At1g58245	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	1618270_at	At1g27450	hypothetical protein LOC100263081	-	2e-2	At5g59420	ORP3C (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3C)	O.I.	H.G.	S.X.	Please select
0.26	32.0	1618253_at	At1g27450	hypothetical protein LOC100246718	-	7e-49	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1616860_at	At1g27450	hypothetical protein LOC100261021	-	4e-83	At3g59920	ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2)	O.I.	H.G.	S.X.	Please select
0.24	28.7	1618602_at	At1g27450	hypothetical protein LOC100267246	-	4e-7	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.24	28.7	1614453_at	At1g27450	hypothetical protein LOC100259029	-	2e+0	At5g18910	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.24	28.7	1617105_at	At1g27450	similar to putative calcium-dependent protein kinase CPK1 adapter protein 2	-	6e-20	At5g66250	kinectin-related	O.I.	H.G.	S.X.	Please select
0.23	27.5	1611803_at	At1g27450	hypothetical protein LOC100243809	-	3e-33	At1g45150	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1611985_at	At1g27450	hypothetical protein LOC100267021	-	2e-26	At5g15880	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1609677_at	At1g27450	hypothetical protein LOC100242539	-	2e-27	At1g71790	F-actin capping protein beta subunit family protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1608838_s_at	At1g27450	hypothetical protein LOC100263578	-	5e-36	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.	Please select
0.20	22.4	1614339_at	At1g27450	hypothetical protein LOC100242639	-	1e+0	At1g27300	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1611545_at	At1g27450	hypothetical protein LOC100260759	-	2e-14	At1g76200	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	20.9	1617960_at	At1g27450	hypothetical protein LOC100259803	-	1e-119	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1616331_at	At1g27450	hypothetical protein LOC100261989	-	6e-25	At3g08890	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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