Co-expression analysis

Gene ID	Gma.4269.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g27450: APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) (HF=3e-19)
Module size	6 genes
NF	0.56
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.97	GmaAffx.91300.1.S1_s_at	CF805768	-	-	9e-67	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.4310.1.S1_at	BE822674	chorismate synthase	-	3e-58	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	GmaAffx.88920.1.S1_s_at	CK605763	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the wheat gene, Ta.43.1.S1_at, orthologous to the query gene, Gma.4269.3.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	92.2	Ta.43.1.S1_at	At1g27450	adenine phosphoribosyltransferase form 1	-	4e-11	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.2207.1.S1_at	At1g27450	-	-	2e-56	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.23454.1.S1_at	At1g27450	-	-	5e-1	At1g27310	NTF2A (NUCLEAR TRANSPORT FACTOR 2A)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.28647.1.S1_at	At1g27450	-	-	6e-78	At1g08360	60S ribosomal protein L10A (RPL10aA)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.13509.2.S1_x_at	At1g27450	-	-	3e-24	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.2852.1.S1_at	At1g27450	-	-	3e-72	At5g15490	UDP-glucose 6-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.2502.2.A1_x_at	At1g27450	HSP80-2	-	3e-57	At5g56010	HSP81-3	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.27713.1.A1_x_at	At1g27450	elongation factor-1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.1406.1.S1_a_at	At1g27450	-	-	2e-10	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.2682.1.A1_at	At1g27450	-	-	1e-26	At2g36060	ubiquitin-conjugating enzyme family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.18.1.S1_at	At1g27450	-	-	2e-113	At1g54270	EIF4A-2	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.794.1.S1_x_at	At1g27450	QM	-	1e-57	At1g14320	SAC52 (SUPPRESSOR OF ACAULIS 52)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.14460.1.S1_at	At1g27450	-	-	3e-4	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.27117.6.S1_x_at	At1g27450	-	-	1e-12	At3g08520	60S ribosomal protein L41 (RPL41D)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.23012.1.S1_at	At1g27450	-	-	7e-20	At1g20200	EMB2719 (EMBRYO DEFECTIVE 2719)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.2848.1.S1_at	At1g27450	-	-	1e-7	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.27117.2.S1_x_at	At1g27450	-	-	2e-15	At2g40205	60S ribosomal protein L41 (RPL41C)	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.25017.1.S1_at	At1g27450	-	-	4e-21	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.23051.1.A1_a_at	At1g27450	-	-	4e-19	At3g47930	ATGLDH (L-GALACTONO-1,4-LACTONE DEHYDOROGENASE)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.2291.1.S1_x_at	At1g27450	ADP-ribosylation factor	-	3e-111	At1g70490	ARFA1D	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.1866.3.S1_at	At1g27450	-	-	4e-3	At1g12920	ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.14415.1.S1_at	At1g27450	20S proteasome beta 7 subunit	-	4e-3	At1g56450	PBG1	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.23479.1.S1_a_at	At1g27450	-	-	1e-47	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.6294.1.S1_s_at	At1g27450	-	-	6e-1	At1g23750	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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