Co-expression analysis

Gene ID	Gma.4269.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g27450: APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) (HF=3e-19)
Module size	6 genes
NF	0.56
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.97	GmaAffx.91300.1.S1_s_at	CF805768	-	-	9e-67	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.4310.1.S1_at	BE822674	chorismate synthase	-	3e-58	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	GmaAffx.88920.1.S1_s_at	CK605763	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.5674.2.S1_s_at, orthologous to the query gene, Gma.4269.3.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	84.2	Ptp.5674.2.S1_s_at	At1g27450	hypothetical protein	-	9e-54	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.119663.1.S1_at	At1g27450	hypothetical protein	-	2e-33	At3g53580	diaminopimelate epimerase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.6358.1.S1_s_at	At1g27450	hypothetical protein	-	2e-60	At2g20420	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.128912.2.S1_s_at	At1g27450	-	-	1e-16	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.138282.1.S1_s_at	At1g27450	hypothetical protein	-	3e-60	At4g35830	aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.33	57.5	PtpAffx.150471.1.S1_s_at	At1g27450	hypothetical protein	-	2e-74	At2g20420	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.157018.2.S1_s_at	At1g27450	hypothetical protein	-	1e-56	At4g33090	APM1 (AMINOPEPTIDASE M1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.91950.1.S1_at	At1g27450	hypothetical protein	-	5e-16	At1g11020	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage