Co-expression analysis

Gene ID	Gma.4269.3.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At1g27450: APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) (HF=3e-19)
Module size	6 genes
NF	0.56
%ile	87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.6	0.97	Gma.4269.3.S1_a_at	CA784404	-	-	3e-19	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.98	GmaAffx.92300.1.S1_s_at	CF807658	Chorismate synthase	-	5e-50	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.60	80.7	0.98	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.59	79.5	0.97	GmaAffx.91300.1.S1_s_at	CF805768	-	-	9e-67	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.4310.1.S1_at	BE822674	chorismate synthase	-	3e-58	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.98	GmaAffx.88920.1.S1_s_at	CK605763	-	-	3e-60	At1g65930	isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig5007_at, orthologous to the query gene, Gma.4269.3.S1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.74	89.1	Contig5007_at	At1g27450	-	-	4e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig6985_at	At1g27450	-	-	6e-9	At3g06610	DNA-binding enhancer protein-related	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig10947_at	At1g27450	-	-	2e+0	At5g27200	ACP5 (acyl carrier protein 5)	O.I.	H.G.	S.X.	Please select
0.64	80.9	Contig20730_s_at	At1g27450	-	-	5e-3	At1g73885	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	78.7	Contig17320_at	At1g27450	-	-	1e-1	At3g61040	CYP76C7	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig17002_at	At1g27450	-	-	1e+0	At2g26670	TED4 (REVERSAL OF THE DET PHENOTYPE 4)	O.I.	H.G.	S.X.	Please select
0.54	70.3	Contig12873_at	At1g27450	-	-	6e+0	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	O.I.	H.G.	S.X.	Please select
0.53	69.7	EBed02_SQ003_F07_s_at	At1g27450	-	-	5e+0	At5g57181	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig10849_at	At1g27450	-	-	3e-3	At5g26600	catalytic/ pyridoxal phosphate binding	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig17334_at	At1g27450	-	-	3e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.49	63.7	Contig14495_at	At1g27450	-	-	2e+0	At5g15200	40S ribosomal protein S9 (RPS9B)	O.I.	H.G.	S.X.	Please select
0.46	61.0	EBro05_SQ003_E05_at	At1g27450	-	-	3e+0	At5g47190	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig6698_at	At1g27450	-	-	9e-19	At1g20330	SMT2 (STEROL METHYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig44_at	At1g27450	-	-	3e-23	At5g02500	HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1)	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig19716_at	At1g27450	-	-	2e-6	At3g01890	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig12345_at	At1g27450	-	-	2e-29	At4g17300	NS1	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig8772_s_at	At1g27450	-	-	3e+0	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	O.I.	H.G.	S.X.	Please select
0.41	53.9	Contig9087_at	At1g27450	-	-	7e-2	At5g66370	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig9449_at	At1g27450	-	-	3e-18	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig16379_s_at	At1g27450	-	-	3e-1	At2g44080	ARL (ARGOS-LIKE)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig18644_at	At1g27450	-	-	1e+0	At4g13210	lyase/ pectate lyase	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig26042_at	At1g27450	-	-	5e+0	Atmg01270	-	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig7511_at	At1g27450	-	-	3e+0	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig8498_at	At1g27450	-	-	6e-8	At4g36390	radical SAM domain-containing protein / TRAM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig6862_s_at	At1g27450	-	-	3e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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