Co-expression analysis

Gene ID Gma.4269.3.S1_a_at
Gene name
Homology with ArabidopsisSimilar to At1g27450: APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) (HF=3e-19)
Module size 6 genes
NF 0.56
%ile 87.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.60.97Gma.4269.3.S1_a_atCA784404--3e-19At1g27450APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)O.I.H.G.S.X.
0.8091.50.98GmaAffx.92300.1.S1_s_atCF807658Chorismate synthase-5e-50At1g48850EMB1144 (embryo defective 1144)O.I.H.G.S.X.
0.6080.70.98Gma.4269.2.S1_a_atBU083811--8e-17At1g27450APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)O.I.H.G.S.X.
0.5979.50.97GmaAffx.91300.1.S1_s_atCF805768--9e-67At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.3142.20.98Gma.4310.1.S1_atBE822674chorismate synthase-3e-58At1g48850EMB1144 (embryo defective 1144)O.I.H.G.S.X.
0.2633.90.98GmaAffx.88920.1.S1_s_atCK605763--3e-60At1g65930isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putativeO.I.H.G.S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g27450, orthologous to the query gene, Gma.4269.3.S1_a_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g27450839636APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)Adenosine phosphoribosyl transferase(E.C:, involved in the one-step salvage of adenine to AMP.O.I.H.G.S.X.
0.8793.5At1g47420841147-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleus;POO.I.H.G.S.X.
0.7888.6At1g47260841129GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.O.I.H.G.S.X.
0.7586.9At2g21870816723unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, nucleolus, chloroplast, plastid, membrane;PMOBAO.I.H.G.S.X.
0.7486.1At5g13450831186ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putativeF:hydrogen ion transporting ATP synthase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:mitochondrion, chloroplast, plasma membrane, membrane, mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);BOMPFO.I.H.G.S.X.
0.6579.6At5g66510836783GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex.O.I.H.G.S.X.
0.6277.3At5g63510836470GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.O.I.H.G.S.X.
0.5570.6At1g22300838837GRF10 (GENERAL REGULATORY FACTOR 10)Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1O.I.H.G.S.X.
0.5368.6At4g02580828130NADH-ubiquinone oxidoreductase 24 kDa subunit, putativeF:electron carrier activity, NAD or NADH binding, oxidoreductase activity, NADH dehydrogenase (ubiquinone) activity;P:response to oxidative stress, mitochondrial electron transport, NADH to ubiquinone;C:mitochondrion, respiratory chain complex I;BOMFPAO.I.H.G.S.X.
0.5166.3At1g22450838851COX6B (CYTOCHROME C OXIDASE 6B)subunit 6b of cytochrome c oxidaseO.I.H.G.S.X.
0.4355.3At3g27430822364PBB1Encodes 20S proteasome beta subunit PBB1 (PBB1).O.I.H.G.S.X.
0.3643.6At5g58030835915transport protein particle (TRAPP) component Bet3 family proteinF:molecular_function unknown;P:ER to Golgi vesicle-mediated transport;C:cellular_component unknown;MFOPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.

Back to the CoP portal site

Back to the KAGIANA project homepage