Co-expression analysis

Gene ID	Gma.4220.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g03210: XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9) (HF=2e-24)
Module size	17 genes
NF	0.27
%ile	52.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.2	0.88	Gma.4220.2.S1_at	AW164216	-	-	2e-24	At4g03210	XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)	O.I.	H.G.	S.X.	Please select
0.41	58.1	0.92	Gma.1458.1.S1_at	BI970708	-	-	6e-42	At1g76160	sks5 (SKU5 Similar 5)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.91	GmaAffx.81472.1.S1_at	AW570625	-	-	8e-11	At2g44740	CYCP4	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.94	GmaAffx.91930.1.S1_s_at	CF807655	-	-	1e+0	At3g46080	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.96	GmaAffx.85168.1.S1_at	BM892178	-	-	1e-28	At4g12420	SKU5	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.93	GmaAffx.93205.1.S1_s_at	CF808930	-	-	1e-53	At3g19820	DWF1 (DWARF 1)	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.95	GmaAffx.79052.2.S1_at	BM521730	-	-	5e-18	At3g19820	DWF1 (DWARF 1)	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.94	GmaAffx.83775.1.S1_s_at	BQ299690	-	-	1e+0	At3g46080	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	0.96	GmaAffx.87042.2.S1_at	AW704742	-	-	5e-8	At4g12420	SKU5	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.92	GmaAffx.54369.1.S1_at	BF067528	-	-	3e-1	At1g10020	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.96	GmaAffx.87042.1.S1_at	AW596159	-	-	1e-9	At4g12420	SKU5	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.93	GmaAffx.40129.1.S1_at	BG238166	-	-	5e-1	At1g54770	-	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.93	GmaAffx.83103.2.S1_at	BE806704	-	-	3e-1	At5g63150	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.93	Gma.9978.2.S1_at	AI495867	-	-	6e-12	At2g34770	FAH1 (FATTY ACID HYDROXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.16	19.7	0.94	Gma.7746.1.S1_at	AW310367	-	-	2e+0	At4g13540	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.94	GmaAffx.93404.1.S1_s_at	CF809129	-	-	9e-2	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.13	16.3	0.94	GmaAffx.1301.88.S1_s_at	BG041563	-	-	4e-12	At5g15600	SP1L4 (SPIRAL1-LIKE4)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.7	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.4	98.6	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.1	98.5	GSM238038	Soybean-Bayfield-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.5	98.3	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.3	98.2	GSM238041	Soybean-Bayfield-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.3	98.2	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
5.2	98.1	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.9	98.0	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.8	97.9	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.8	97.9	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.5	97.7	GSM238053	Soybean-PS46R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.3	97.5	GSM238039	Soybean-Bayfield-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.3	97.5	GSM238036	Soybean-Bayfield-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.2	97.4	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
4.0	97.2	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.7	96.8	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.4	96.4	GSM238061	Soybean-S03W4-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.3	96.2	GSM170925	V2 Control, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.3	96.2	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
3.3	96.2	GSM238060	Soybean-S03W4-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage