Co-expression analysis

Gene ID	Gma.4068.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g60800: zinc finger (DHHC type) family protein (HF=7e-26)
Module size	8 genes
NF	0.33
%ile	61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	81.8	0.98	Gma.4068.1.S1_at	CD399501	-	-	7e-26	At3g60800	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	Gma.6570.1.S1_s_at	AW350797	-	-	6e-48	At1g30620	MUR4 (MURUS 4)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	Gma.3568.1.S1_x_at	BI941735	-	-	1e-54	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.6454.1.S1_at	BM271508	-	-	2e-90	At5g25265	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.16294.1.S1_at	CD413154	-	-	1e-44	At1g69340	appr-1-p processing enzyme family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	Gma.7015.1.S1_at	CD402211	-	-	3e-57	At2g42500	PP2A-4	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.6024.1.S1_s_at	CD397288	-	-	5e-1	At5g41290	receptor-like protein kinase-related	O.I.	H.G.	S.X.	Please select
0.15	18.7	0.98	GmaAffx.92473.1.S1_s_at	CF809138	-	-	1e+0	At3g01360	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.4	96.4	GSM294218	69_3140.2H.R9H3P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM294514	77_2502.2K.R025P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294206	58_2338.2H.R240P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the grape gene, 1612943_at, orthologous to the query gene, Gma.4068.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.9	1612943_at	At3g60800	hypothetical protein LOC100250133	-	5e-1	At4g30480	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1618305_at	At3g60800	hypothetical protein LOC100256855	-	3e-73	At2g26990	FUS12 (FUSCA 12)	O.I.	H.G.	S.X.	Please select
0.45	64.6	1613658_at	At3g60800	hypothetical protein LOC100244785	-	4e-4	At2g02970	nucleoside phosphatase family protein / GDA1/CD39 family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1608723_at	At3g60800	hypothetical protein LOC100261604	-	3e-5	At5g22040	-	O.I.	H.G.	S.X.	Please select
0.38	53.6	1611624_at	At3g60800	hypothetical protein LOC100246770	-	9e-59	At3g48170	ALDH10A9	O.I.	H.G.	S.X.	Please select
0.29	37.7	1616342_at	At3g60800	hypothetical protein LOC100258259	-	9e-2	At5g18000	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select
0.27	34.0	1621535_s_at	At3g60800	hypothetical protein LOC100247214	-	6e-87	At2g18020	EMB2296 (embryo defective 2296)	O.I.	H.G.	S.X.	Please select
0.23	27.5	1608677_at	At3g60800	hypothetical protein LOC100258930	-	3e-22	At3g19130	ATRBP47B (RNA-binding protein 47B)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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