Co-expression analysis

Gene ID Gma.4068.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g60800: zinc finger (DHHC type) family protein (HF=7e-26)
Module size 8 genes
NF 0.33
%ile 61.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6181.80.98Gma.4068.1.S1_atCD399501--7e-26At3g60800zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.5778.80.98Gma.6570.1.S1_s_atAW350797--6e-48At1g30620MUR4 (MURUS 4)O.I.H.G.S.X.
0.5071.70.98Gma.3568.1.S1_x_atBI941735--1e-54At5g10260AtRABH1e (Arabidopsis Rab GTPase homolog H1e)O.I.H.G.S.X.
0.3853.30.98Gma.6454.1.S1_atBM271508--2e-90At5g25265unknown proteinO.I.H.G.S.X.
0.2939.00.98Gma.16294.1.S1_atCD413154--1e-44At1g69340appr-1-p processing enzyme family proteinO.I.H.G.S.X.
0.2735.70.98Gma.7015.1.S1_atCD402211--3e-57At2g42500PP2A-4O.I.H.G.S.X.
0.2228.10.98Gma.6024.1.S1_s_atCD397288--5e-1At5g41290receptor-like protein kinase-relatedO.I.H.G.S.X.
0.1518.70.98GmaAffx.92473.1.S1_s_atCF809138--1e+0At3g01360unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.496.4GSM29421869_3140.2H.R9H3P_new, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29451477_2502.2K.R025P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29289065_C202.1L.R9L1P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29413286_3112.2G.R9G1P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29420658_2338.2H.R240P_new, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0804300, orthologous to the query gene, Gma.4068.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os03g0804300At3g60800-Huntingtin-interacting protein 146e-14At3g60800zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.7391.1Os03g0123600At3g60800-Molluscan rhodopsin C-terminal tail family protein6e-29At5g41390-O.I.H.G.S.X.
0.5068.0Os07g0194000At3g60800-Vesicle-associated membrane protein 721(AtVAMP721) (v-SNARE synaptobrevin 7B) (AtVAMP7B)6e-35At1g04750VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)O.I.H.G.S.X.
0.4762.3Os12g0605400At3g60800-CROC-1-like protein (Fragment)9e-12At1g23260MMZ1 (MMS ZWEI HOMOLOGUE 1)O.I.H.G.S.X.
0.4051.1Os02g0297600At3g60800-Protein of unknown function DUF707 family protein8e-20At1g67850unknown proteinO.I.H.G.S.X.
0.3338.8Os02g0690700At3g60800-Clathrin adaptor complex, medium chain familyprotein3e+0At1g19770ATPUP14O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage