Co-expression analysis

Gene ID	Gma.4035.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g11560: catalytic (HF=1e-38)
Module size	6 genes
NF	0.52
%ile	83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	0.99	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	Gma.8460.1.S1_at	AF404404.1	acyl-CoA oxidase	-	7e-39	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.99	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the grape gene, 1620763_at, orthologous to the query gene, Gma.4035.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	1620763_at	At5g11560	hypothetical protein LOC100264673	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.67	87.9	1617248_at	At5g11560	hypothetical protein LOC100265801	-	4e-19	At3g58560	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.51	73.2	1622693_at	At5g11560	hypothetical protein LOC100246014	-	3e-10	At4g12650	-	O.I.	H.G.	S.X.	Please select
0.51	73.2	1608671_at	At5g11560	hypothetical protein LOC100243213	-	1e+0	At5g65609	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1619414_at	At5g11560	hypothetical protein LOC100241708	-	1e-8	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.47	67.7	1611523_at	At5g11560	hypothetical protein LOC100267138	-	6e-16	At3g21865	PEX22 (peroxin 22)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1622424_at	At5g11560	hypothetical protein LOC100265980	-	9e-11	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.46	66.5	AFFX-Vvi-actin-3_s_at	At5g11560	actin 1	-				O.I.	H.G.	S.X.	Please select
0.45	64.6	1620109_s_at	At5g11560	hypothetical protein LOC100243583	-	2e+0	At3g57930	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611412_at	At5g11560	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	1612909_at	At5g11560	hypothetical protein LOC100264659	-	3e-8	At3g28970	AAR3 (antiauxin-resistant 3)	O.I.	H.G.	S.X.	Please select
0.41	58.7	1609191_s_at	At5g11560	hypothetical protein LOC100258056	-	0	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please select
0.41	58.7	1606368_s_at	At5g11560	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1607141_at	At5g11560	hypothetical protein LOC100254376	-	1e-77	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1613731_at	At5g11560	hypothetical protein LOC100248748	-	2e-5	At5g63840	RSW3 (RADIAL SWELLING 3)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1610278_s_at	At5g11560	hypothetical protein LOC100259495	-	5e-38	At4g33250	EIF3K (EUKARYOTIC TRANSLATION INITIATION FACTOR 3K)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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