Co-expression analysis

Gene ID	Gma.4035.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g11560: catalytic (HF=1e-38)
Module size	6 genes
NF	0.52
%ile	83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	0.99	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	Gma.8460.1.S1_at	AF404404.1	acyl-CoA oxidase	-	7e-39	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.99	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7610.1.S1_a_at, orthologous to the query gene, Gma.4035.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	66.8	Ta.7610.1.S1_a_at	At5g11560	-	-	1e-6	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.3227.2.S1_x_at	At5g11560	alternative splicing regulator	-	1e-17	At1g09140	SF2/ASF-like splicing modulator (SRP30)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.9175.1.S1_at	At5g11560	-	-	4e-95	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.1902.2.S1_a_at	At5g11560	-	-	3e-4	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.808.1.S1_at	At5g11560	HBP-1b	-	2e-5	At3g12250	TGA6 (TGACG MOTIF-BINDING FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.2041.2.S1_a_at	At5g11560	-	-	2e-6	At3g12760	-	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.14460.1.S1_at	At5g11560	-	-	3e-4	At1g79650	RAD23	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Zea_mays

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