Co-expression analysis

Gene ID Gma.4035.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g11560: catalytic (HF=1e-38)
Module size 6 genes
NF 0.52
%ile 83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5374.20.99Gma.4035.1.S1_atBQ453456--1e-38At5g11560catalyticO.I.H.G.S.X.
0.6786.10.99GmaAffx.92974.1.S1_s_atCF808699--8e-2At3g17780unknown proteinO.I.H.G.S.X.
0.6786.10.99Gma.8460.1.S1_atAF404404.1acyl-CoA oxidase-7e-39At4g16760ACX1 (ACYL-COA OXIDASE 1)O.I.H.G.S.X.
0.4463.30.99Gma.448.2.S1_a_atBM091754--3e-21At3g60820PBF1O.I.H.G.S.X.
0.4057.10.99Gma.5368.1.S1_atBQ627877--2e-30At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)O.I.H.G.S.X.
0.3853.30.99Gma.17344.1.S1_atCD409198--7e-41At2g33040ATP synthase gamma chain, mitochondrial (ATPC)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.396.2GSM258502Vegetative shoot apical meristem, replicate BGSE10251Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeansLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0230600, orthologous to the query gene, Gma.4035.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8395.8Os05g0230600At5g11560-WD40-like domain containing protein1e-7At5g11560catalyticO.I.H.G.S.X.
0.8395.8Os03g0227000At5g11560-Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP)1e-25At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.8094.6Os01g0911200At5g11560-Ribophorin II family protein1e-6At4g21150HAP6 (HAPLESS 6)O.I.H.G.S.X.
0.7391.1Os07g0657200At5g11560-WD40-like domain containing protein3e-8At3g63460WD-40 repeat family proteinO.I.H.G.S.X.
0.6787.2Os02g0537900At5g11560-Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1)5e-87At1g16780vacuolar-type H+-translocating inorganic pyrophosphatase, putativeO.I.H.G.S.X.
0.6079.7Os05g0556100At5g11560-SDL5A1e-43At3g61760ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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