Co-expression analysis

Gene ID	Gma.4035.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g11560: catalytic (HF=1e-38)
Module size	6 genes
NF	0.52
%ile	83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	74.2	0.99	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	Gma.8460.1.S1_at	AF404404.1	acyl-CoA oxidase	-	7e-39	At4g16760	ACX1 (ACYL-COA OXIDASE 1)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.99	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.99	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

A co-expression module including the barley gene, Contig7198_at, orthologous to the query gene, Gma.4035.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	Contig7198_at	At5g11560	-	-	5e-9	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig21011_at	At5g11560	-	-	5e-3	At4g01915	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	HVSMEg0017C12r2_at	At5g11560	-	-	1e+0	At3g17300	-	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig16713_at	At5g11560	-	-	2e+0	At5g54460	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig26610_at	At5g11560	-	-	1e+0	At1g70360	F-box protein-related	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig9428_at	At5g11560	-	-	6e-4	At5g66550	Maf family protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig6442_at	At5g11560	-	-	2e-1	At2g38920	SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related	O.I.	H.G.	S.X.	Please select
0.18	18.2	HM11C20r_at	At5g11560	-	-	4e+0	At3g55890	yippee family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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