CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.374.1.A1_at

Gene name
Homology with Arabidopsis Similar to At3g29250: copper ion binding / oxidoreductase (HF=1e-3)

Module size 6 genes

NF 0.55

%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 71.7 0.93 Gma.374.1.A1_at AW309650 - - 1e-3 At3g29250 copper ion binding / oxidoreductase O.I. H.G. S.X.
0.67 86.1 0.91 Gma.4843.1.A1_at BI969381 - - 1e+1 At5g60430 antiporter/ drug transporter O.I. H.G. S.X.
0.67 86.1 0.92 Gma.374.2.S1_at AI494929 - - 1e+0 At2g47140 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.57 78.8 0.92 Gma.6494.1.S1_at BI784551 - - 3e-41 At2g12646 - O.I. H.G. S.X.
0.47 66.6 0.91 Gma.6414.1.S1_at BE659785 - - 5e-3 At5g57770 - O.I. H.G. S.X.
0.35 48.6 0.91 Gma.405.1.A1_at AI443411 - - 3e-3 At5g12940 leucine-rich repeat family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.1 97.3 GSM294022 73_2244.2F.R060P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM293747 7_2141.2C.R116L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM294048 97_2249.2F.R268L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM293684 22_2141.2C.R116U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM294469 36_2484.2K.R271P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM294496 60_2509.2K.R241L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292580 10_1331.1I.R208L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293019 24_1082.1N.R048P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the maize gene, ZmAffx.938.1.S1_at, orthologous to the query gene, Gma.374.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.75 90.8 ZmAffx.938.1.S1_at At3g29250 - - 3e+0 At3g21400 unknown protein O.I. H.G. S.X.
0.75 90.8 Zm.13616.1.S1_at At3g29250 - - 2e+0 At4g25315 Expressed protein O.I. H.G. S.X.
0.75 90.8 Zm.11787.1.A1_a_at At3g29250 - - 6e+0 At5g17523 - O.I. H.G. S.X.
0.71 88.2 Zm.12070.1.A1_at At3g29250 ribonuclease P - 2e-1 At3g02090 mitochondrial processing peptidase beta subunit, putative O.I. H.G. S.X.
0.71 88.2 Zm.2805.1.A1_at At3g29250 hypothetical protein LOC100274443 - 5e+0 At4g13266 unknown protein O.I. H.G. S.X.
0.60 77.8 Zm.18157.1.A1_at At3g29250 - - 2e-1 At4g20290 unknown protein O.I. H.G. S.X.
0.60 77.8 ZmAffx.105.1.S1_at At3g29250 - - 3e+0 At4g20000 VQ motif-containing protein O.I. H.G. S.X.
0.50 65.7 Zm.5813.1.A1_at At3g29250 hypothetical protein LOC100191474 - 8e-32 At5g55310 TOP1BETA (DNA TOPOISOMERASE 1 BETA) O.I. H.G. S.X.
0.50 65.7 ZmAffx.901.1.A1_at At3g29250 - - 1e+1 At5g47455 unknown protein O.I. H.G. S.X.
0.40 48.5 Zm.15937.1.A1_at At3g29250 - - 5e+0 At3g25200 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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