Co-expression analysis

Gene ID Gma.374.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g29250: copper ion binding / oxidoreductase (HF=1e-3)
Module size 6 genes
NF 0.55
%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5071.70.93Gma.374.1.A1_atAW309650--1e-3At3g29250copper ion binding / oxidoreductaseO.I.H.G.S.X.
0.6786.10.91Gma.4843.1.A1_atBI969381--1e+1At5g60430antiporter/ drug transporterO.I.H.G.S.X.
0.6786.10.92Gma.374.2.S1_atAI494929--1e+0At2g47140short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5778.80.92Gma.6494.1.S1_atBI784551--3e-41At2g12646-O.I.H.G.S.X.
0.4766.60.91Gma.6414.1.S1_atBE659785--5e-3At5g57770-O.I.H.G.S.X.
0.3548.60.91Gma.405.1.A1_atAI443411--3e-3At5g12940leucine-rich repeat family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.197.3GSM29402273_2244.2F.R060P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM2937477_2141.2C.R116L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM29404897_2249.2F.R268L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.596.6GSM29368422_2141.2C.R116U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29446936_2484.2K.R271P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29449660_2509.2K.R241L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29258010_1331.1I.R208L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29301924_1082.1N.R048P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1615142_at, orthologous to the query gene, Gma.374.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9095.61615142_atAt3g29250hypothetical protein LOC100266152-6e-2At1g24010-O.I.H.G.S.X.
0.3548.51608208_atAt3g29250hypothetical protein LOC100255973-1e+0At3g47860apolipoprotein D-relatedO.I.H.G.S.X.
0.2734.01610400_atAt3g29250hypothetical protein LOC100247229-1e+0At5g48080-O.I.H.G.S.X.
0.2734.01619694_atAt3g29250hypothetical protein LOC100256726-3e-1At2g29980FAD3 (FATTY ACID DESATURASE 3)O.I.H.G.S.X.
0.1819.41620463_atAt3g29250hypothetical protein LOC100265246-1e+0At2g27970CKS2 (CDK-subunit 2)O.I.H.G.S.X.
0.1313.31616090_atAt3g29250hypothetical protein LOC100264059-4e+0At5g67560ATARLA1D (ADP-ribosylation factor-like A1D)O.I.H.G.S.X.
0.1111.31617034_atAt3g29250hypothetical protein LOC100248287-1e+0At5g09480hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.1010.31607914_atAt3g29250hypothetical protein LOC100246595 /// hypothetical protein LOC100246635-4e-1At5g52430hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.099.41617767_s_atAt3g29250hypothetical protein LOC100259387-2e-15At5g50870UBC27 (ubiquitin-conjugating enzyme 27)O.I.H.G.S.X.
0.077.81615269_atAt3g29250hypothetical protein LOC100245841-1e+0At4g15250zinc finger (B-box type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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