Co-expression analysis

Gene ID	Gma.374.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g29250: copper ion binding / oxidoreductase (HF=1e-3)
Module size	6 genes
NF	0.55
%ile	85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	71.7	0.93	Gma.374.1.A1_at	AW309650	-	-	1e-3	At3g29250	copper ion binding / oxidoreductase	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.91	Gma.4843.1.A1_at	BI969381	-	-	1e+1	At5g60430	antiporter/ drug transporter	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.92	Gma.374.2.S1_at	AI494929	-	-	1e+0	At2g47140	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.92	Gma.6494.1.S1_at	BI784551	-	-	3e-41	At2g12646	-	O.I.	H.G.	S.X.	Please select
0.47	66.6	0.91	Gma.6414.1.S1_at	BE659785	-	-	5e-3	At5g57770	-	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.91	Gma.405.1.A1_at	AI443411	-	-	3e-3	At5g12940	leucine-rich repeat family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.1	97.3	GSM294022	73_2244.2F.R060P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293747	7_2141.2C.R116L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293684	22_2141.2C.R116U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM294469	36_2484.2K.R271P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM294496	60_2509.2K.R241L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292580	10_1331.1I.R208L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293019	24_1082.1N.R048P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.121004.1.A1_at, orthologous to the query gene, Gma.374.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	93.6	PtpAffx.121004.1.A1_at	At3g29250	hypothetical protein	-	6e-3	At2g47140	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.206294.1.S1_at	At3g29250	cytochrome P450	-	1e-2	At3g48300	CYP71A23	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.207397.1.S1_at	At3g29250	hypothetical protein	-	3e-1	At3g62080	SNF7 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.128848.1.S1_at	At3g29250	-	-	3e-5	At3g63200	PLP9 (PATATIN-LIKE PROTEIN 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.205037.1.S1_at	At3g29250	hypothetical protein	-	7e-7	At3g52450	PUB22 (PLANT U-BOX 22)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.44	71.9	PtpAffx.207397.1.S1_x_at	At3g29250	hypothetical protein	-	3e-1	At3g62080	SNF7 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage