Co-expression analysis

Gene ID Gma.374.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g29250: copper ion binding / oxidoreductase (HF=1e-3)
Module size 6 genes
NF 0.55
%ile 85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5071.70.93Gma.374.1.A1_atAW309650--1e-3At3g29250copper ion binding / oxidoreductaseO.I.H.G.S.X.
0.6786.10.91Gma.4843.1.A1_atBI969381--1e+1At5g60430antiporter/ drug transporterO.I.H.G.S.X.
0.6786.10.92Gma.374.2.S1_atAI494929--1e+0At2g47140short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.5778.80.92Gma.6494.1.S1_atBI784551--3e-41At2g12646-O.I.H.G.S.X.
0.4766.60.91Gma.6414.1.S1_atBE659785--5e-3At5g57770-O.I.H.G.S.X.
0.3548.60.91Gma.405.1.A1_atAI443411--3e-3At5g12940leucine-rich repeat family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.197.3GSM29402273_2244.2F.R060P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM2937477_2141.2C.R116L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.796.8GSM29404897_2249.2F.R268L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.596.6GSM29368422_2141.2C.R116U, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.396.2GSM29446936_2484.2K.R271P, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.296.0GSM29449660_2509.2K.R241L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.195.8GSM29258010_1331.1I.R208L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.095.6GSM29301924_1082.1N.R048P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g29250, orthologous to the query gene, Gma.374.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.5368.6At3g29250822580copper ion binding / oxidoreductaseF:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAVO.I.H.G.S.X.
0.6075.7At5g47980834849transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFBO.I.H.G.S.X.
0.5773.8At1g14960838061major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.H.G.S.X.
0.5570.6At5g48010834852THAS1 (THALIANOL SYNTHASE 1)Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism.O.I.H.G.S.X.
0.4355.3At1g66800842998cinnamyl-alcohol dehydrogenase family / CAD familysimilar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenaseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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