Co-expression analysis

Gene ID	Gma.3641.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g29900: CARB (CARBAMOYL PHOSPHATE SYNTHETASE B) (HF=8e-6)
Module size	6 genes
NF	0.07
%ile	22.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	78.8	0.96	Gma.3641.2.S1_at	BI316996	-	-	8e-6	At1g29900	CARB (CARBAMOYL PHOSPHATE SYNTHETASE B)	O.I.	H.G.	S.X.	Please select
0.44	63.3	0.97	Gma.7866.1.S1_at	BU550728	-	-	3e-8	At2g44065	ribosomal protein L2 family protein	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.97	Gma.3960.1.S1_at	CD401978	-	-	6e-85	At1g30120	PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.96	GmaAffx.73763.1.S1_at	BM523157	-	-	2e-3	At3g15000	-	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.96	Gma.10784.1.S1_at	CD399552	-	-	7e-15	At4g39880	ribosomal protein L23 family protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	0.96	Gma.2203.1.A1_s_at	BG363719	-	-	6e-15	At1g64880	ribosomal protein S5 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	98.5	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
6.0	98.5	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
5.9	98.5	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
5.7	98.4	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
5.5	98.3	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
5.5	98.3	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
5.2	98.1	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.1	98.1	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
5.0	98.0	GSM258502	Vegetative shoot apical meristem, replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.9	98.0	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.7	97.8	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
4.7	97.8	GSM258504	Soybean shoot apical meristem, 4 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.7	97.8	GSM258501	Soybean shoot apical meristem, 1 short-day treatment replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.6	97.7	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
4.5	97.7	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.5	97.7	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.4	97.6	GSM258497	Soybean Shoot Apical Meristem, 1 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.2	97.4	GSM258498	Soybean shoot apical meristem, 2 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.2	97.4	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
4.1	97.3	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
4.0	97.2	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.8	97.0	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.6	96.7	GSM258503	Soybean shoot apical meristem, 2 short-day replicate B	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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