CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.3639.1.S1_at

Gene name syringolide-induced protein B15-3-5
Homology with Arabidopsis Similar to At2g38600: acid phosphatase class B family protein (HF=1e-4)

Module size 6 genes

NF 0.48

%ile 79.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 87.8 0.95 Gma.3639.1.S1_at AB083030.1 syringolide-induced protein B15-3-5 - 1e-4 At2g38600 acid phosphatase class B family protein O.I. H.G. S.X.
0.50 71.7 0.95 GmaAffx.36250.1.S1_s_at BG551078 - - 2e-1 At5g62520 SRO5 (SIMILAR TO RCD ONE 5) O.I. H.G. S.X.
0.50 71.7 0.95 GmaAffx.93046.1.S1_at CF808771 - - 3e-1 At5g62520 SRO5 (SIMILAR TO RCD ONE 5) O.I. H.G. S.X.
0.50 71.7 0.96 GmaAffx.74525.2.S1_at BI892728 WRKY6 - 5e-1 At5g64810 WRKY51 O.I. H.G. S.X.
0.44 63.3 0.96 Gma.4470.1.S1_s_at AW156251 - - 2e+0 At5g41401 unknown protein O.I. H.G. S.X.
0.19 23.7 0.94 GmaAffx.46686.1.S1_at BQ081277 - - 1e-5 At1g07570 APK1A O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g38600, orthologous to the query gene, Gma.3639.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.47 61.2 At2g38600 818442 acid phosphatase class B family protein F:acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBO O.I. H.G. S.X.
0.63 78.1 At5g07150 830606 leucine-rich repeat family protein F:protein binding, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.55 70.6 At4g11230 826725 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 6 functions;P:oxidation reduction;C:integral to membrane, membrane;MFPBOA O.I. H.G. S.X.
0.52 67.4 At4g10550 826647 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. H.G. S.X.
0.47 61.2 At5g16900 831553 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.44 57.2 At4g15740 827252 C2 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PMFO O.I. H.G. S.X.
0.42 53.9 At2g23960 816929 defense-related protein, putative F:catalytic activity;P:defense response;C:cellular_component unknown;OBAFPM O.I. H.G. S.X.
0.40 50.8 At3g51360 824299 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. H.G. S.X.
0.40 50.8 At5g59260 836044 lectin protein kinase, putative F:protein serine/threonine kinase activity, sugar binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. H.G. S.X.
0.38 46.7 At4g26560 828763 CBL7 (CALCINEURIN B-LIKE 7) Encodes calcineurin B-like protein 7 (CBL7). O.I. H.G. S.X.
0.28 30.3 At1g07560 837270 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. H.G. S.X.
0.27 26.2 At1g71692 843497 AGL12 (AGAMOUS-LIKE 12) Encodes a member of the MADS box family of transcription factors. Involved in root cell differentiation and flowering time. Loss of function mutations have abnormal cellular differentiation in the roots and are late flowering. AGL12 along with AGL14, and AGL17 is preferentially expressed in root tissues and represent the only characterized MADS box genes expressed in roots. O.I. H.G. S.X.
0.27 26.2 At1g72300 843562 leucine-rich repeat transmembrane protein kinase, putative Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion. O.I. H.G. S.X.
0.18 11.4 At5g10280 830892 ATMYB92 (MYB DOMAIN PROTEIN 92) Encodes a putative transcription factor (MYB92). O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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