Co-expression analysis

Gene ID	Gma.3563.2.S1_a_at
Gene name
Homology with Arabidopsis	Similar to At3g55770: LIM domain-containing protein (HF=3e-29)
Module size	26 genes
NF	0.30
%ile	55.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	0.97	Gma.3563.2.S1_a_at	BG362899	-	-	3e-29	At3g55770	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.98	GmaAffx.84960.1.S1_at	BE020664	-	-	1e-73	At1g10950	endomembrane protein 70, putative	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.1440.2.S1_at	BG839819	-	-	6e-32	At1g12840	DET3 (DE-ETIOLATED 3)	O.I.	H.G.	S.X.	Please select
0.38	53.3	0.98	Gma.12953.2.S1_s_at	BG507757	-	-	1e-75	At5g56130	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	0.98	GmaAffx.34172.1.S1_at	BF070551	-	-	5e-18	At1g09150	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	0.98	GmaAffx.25046.2.S1_at	BM886627	-	-	3e-3	At4g05440	EDA35 (embryo sac development arrest 35)	O.I.	H.G.	S.X.	Please select
0.34	47.2	0.97	GmaAffx.29798.1.S1_at	AI794786	-	-	2e-6	At5g13500	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	GmaAffx.59452.2.S1_at	BM144040	-	-	3e-28	At5g53340	galactosyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.98	GmaAffx.30833.1.S1_at	AW509222	-	-	1e-5	At5g55640	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.99	GmaAffx.91170.1.S1_x_at	CF806895	-	-	5e-58	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.98	GmaAffx.91258.1.S1_s_at	CF806983	-	-	1e-15	At5g02280	synbindin, putative	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	Gma.14354.2.S1_at	BI472159	-	-	3e-53	At5g59840	Ras-related GTP-binding family protein	O.I.	H.G.	S.X.	Please select
0.30	40.4	0.98	GmaAffx.22627.1.S1_x_at	BG352722	-	-	4e-2	At1g18520	TET11 (TETRASPANIN11)	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	GmaAffx.62496.1.S1_at	AW309009	-	-	1e-3	At2g30460	-	O.I.	H.G.	S.X.	Please select
0.27	35.7	0.98	GmaAffx.47025.1.S1_at	BM892182	-	-	6e-27	At5g11980	conserved oligomeric Golgi complex component-related / COG complex component-related	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	GmaAffx.92555.1.S1_s_at	CF808280	-	-	2e-113	At5g20020	RAN2	O.I.	H.G.	S.X.	Please select
0.25	32.6	0.98	Gma.17344.2.S1_s_at	BU080862	-	-	4e-13	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	GmaAffx.80777.1.S1_at	BE329712	-	-	6e-5	At1g75110	RRA2 (REDUCED RESIDUAL ARABINOSE 2)	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	GmaAffx.22733.1.S1_s_at	BG551394	-	-	9e-10	At5g39740	60S ribosomal protein L5 (RPL5B)	O.I.	H.G.	S.X.	Please select
0.21	26.6	0.98	Gma.1932.1.S1_s_at	BI970420	-	-	1e-5	At3g05520	F-actin capping protein alpha subunit family protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	0.98	Gma.17299.3.S1_a_at	BI973058	-	-	1e-24	At1g47640	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.98	Gma.6234.1.S1_at	BQ612367	-	-	3e-31	At3g21865	PEX22 (peroxin 22)	O.I.	H.G.	S.X.	Please select
0.18	22.3	0.98	Gma.8031.1.S1_at	BE823105	-	-	4e-76	At4g12590	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	GmaAffx.30041.1.S1_at	AW185758	-	-	8e-1	At1g72240	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	GmaAffx.58877.1.S1_at	BG044001	-	-	2e-57	At4g00710	BSK3 (BR-SIGNALING KINASE 3)	O.I.	H.G.	S.X.	Please select
0.17	21.2	0.98	GmaAffx.92831.1.S1_s_at	CF808556	-	-	1e+0	At5g43460	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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