Co-expression analysis

Gene ID	Gma.3293.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g75950: SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) (HF=5e-23)
Module size	23 genes
NF	0.36
%ile	64.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.2	0.95	Gma.3293.1.S1_at	CD390735	-	-	5e-23	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.63	82.9	0.96	GmaAffx.60153.1.S1_at	BM523538	-	-	2e+0	At3g07710	-	O.I.	H.G.	S.X.	Please select
0.53	74.2	0.97	Gma.5803.2.S1_at	BU761097	-	-	2e-8	At5g03630	ATMDAR2	O.I.	H.G.	S.X.	Please select
0.51	72.3	0.96	Gma.4604.1.S1_at	CA802306	-	-	3e-47	At4g14710	acireductone dioxygenase [iron(II)-requiring]/ metal ion binding	O.I.	H.G.	S.X.	Please select
0.48	67.7	0.96	Gma.1965.1.S1_x_at	L01432.1	calmodulin	-	4e-94	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.45	63.9	0.96	Gma.1965.1.S1_at	L01432.1	calmodulin	-	4e-94	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.97	GmaAffx.46271.1.S1_at	AW348765	-	-	1e+0	At4g16800	enoyl-CoA hydratase, putative	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.97	Gma.11052.1.S1_at	AI795084	-	-	7e-31	At3g23490	CYN (CYANASE)	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.97	Gma.5728.1.S1_at	AW278139	-	-	2e+0	At3g53402	CPuORF46 (Conserved peptide upstream open reading frame 46)	O.I.	H.G.	S.X.	Please select
0.39	54.5	0.98	Gma.5594.1.S1_at	BQ786297	-	-	1e-9	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	O.I.	H.G.	S.X.	Please select
0.35	48.6	0.98	Gma.14945.1.S1_at	BG157566	-	-	2e-1	At3g12210	sequence-specific DNA binding	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.96	GmaAffx.53993.1.A1_at	BQ628559	-	-	1e-16	At3g61540	peptidase family protein	O.I.	H.G.	S.X.	Please select
0.32	43.7	0.97	Gma.6011.1.S1_at	CA800937	-	-	3e-1	At1g63460	glutathione peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.29	39.0	0.98	Gma.10635.1.S1_at	CD404469	-	-	2e+0	At1g72020	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.97	GmaAffx.39725.1.S1_at	BI945410	-	-	8e-1	At3g57280	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.0	0.97	Gma.5058.1.A1_at	BI968633	-	-	3e+0	At1g06180	ATMYB13 (MYB DOMAIN PROTEIN 13)	O.I.	H.G.	S.X.	Please select
0.26	33.9	0.97	Gma.10647.1.S1_at	AI431164	-	-	1e-23	At4g34270	TIP41-like family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	0.97	Gma.6779.1.S1_at	AF532626.1	small GTP-binding protein	-	2e-17	At1g06400	ARA-2	O.I.	H.G.	S.X.	Please select
0.22	28.1	0.98	Gma.7635.1.S1_at	AW310136	-	-	9e-7	At2g41790	peptidase M16 family protein / insulinase family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.97	GmaAffx.59763.1.S1_x_at	AW620896	-	-	2e+0	At5g52010	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.97	GmaAffx.34569.1.S1_s_at	AW306183	-	-	1e+1	Atcg00130	-	O.I.	H.G.	S.X.	Please select
0.19	23.7	0.97	Gma.5057.3.A1_at	CA935008	-	-	7e-14	At5g13430	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.11	14.2	0.98	Gma.4379.3.A1_x_at	CD392760	-	-	8e-14	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	96.0	GSM182034	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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