Co-expression analysis

Gene ID	Gma.3107.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g62790: DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) (HF=1e-97)
Module size	8 genes
NF	0.72
%ile	96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	78.2	0.97	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	O.I.	H.G.	S.X.	Please select
0.82	91.9	0.97	Gma.11238.1.S1_a_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.78	90.6	0.97	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.97	Gma.10455.1.S1_s_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.98	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.97	GmaAffx.77778.1.S1_at	AW185540	-	-	5e+0	At5g52480	-	O.I.	H.G.	S.X.	Please select
0.57	78.8	0.98	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.97	Gma.4927.1.S1_at	BG510284	-	-	7e-3	At4g15236	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	96.2	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293802	45_3067.2D.R9D3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM244909	3_VP9.I3L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1	95.8	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.19592.3.S1_at, orthologous to the query gene, Gma.3107.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	PtpAffx.19592.3.S1_at	At5g62790	hypothetical protein	-	5e-95	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.38	63.7	PtpAffx.52902.1.A1_at	At5g62790	hypothetical protein	-	2e-3	At2g25820	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.81990.1.A1_s_at	At5g62790	hypothetical protein	-	1e+1	At5g61050	histone deacetylase-related / HD-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.2093.1.S1_at	At5g62790	hypothetical protein	-	2e-34	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.27	47.1	PtpAffx.9234.1.A1_s_at	At5g62790	hypothetical protein	-	9e-3	At5g18140	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.1259.1.S1_s_at	At5g62790	hypothetical protein	-	4e-1	At3g12410	3'-5' exonuclease/ nucleic acid binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.6875.1.S1_s_at	At5g62790	hypothetical protein	-	1e-22	At1g31812	ACBP6 (acyl-CoA-binding protein 6)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.62474.1.A1_at	At5g62790	hypothetical protein	-	6e+0	At3g03290	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	Ptp.78.3.A1_a_at	At5g62790	-	-	9e-33	At1g30120	PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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