CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.3107.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g62790: DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) (HF=1e-97)

Module size 8 genes

NF 0.72

%ile 96.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 78.2 0.97 Gma.3107.1.S1_at BE658900 - - 1e-97 At5g62790 DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) O.I. H.G. S.X.
0.82 91.9 0.97 Gma.11238.1.S1_a_at BQ454110 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.78 90.6 0.97 Gma.11238.1.S1_at BQ454110 - - 3e-121 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.77 90.3 0.97 Gma.10455.1.S1_s_at BQ628953 - - 3e-8 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) O.I. H.G. S.X.
0.71 87.8 0.98 Gma.10455.1.S1_at BQ628953 - - 3e-8 At4g34350 HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE) O.I. H.G. S.X.
0.67 86.1 0.97 GmaAffx.77778.1.S1_at AW185540 - - 5e+0 At5g52480 - O.I. H.G. S.X.
0.57 78.8 0.98 GmaAffx.90026.1.S1_s_at CF805751 - - 5e-18 At5g60600 HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE) O.I. H.G. S.X.
0.50 71.7 0.97 Gma.4927.1.S1_at BG510284 - - 7e-3 At4g15236 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 96.2 GSM294047 96_3095.2F.R9F1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM293802 45_3067.2D.R9D3L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM293226 15_C065.1P.R9P2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM244909 3_VP9.I3L2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1 95.8 GSM294272 26_2427.2I.R297L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g62790, orthologous to the query gene, Gma.3107.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.67 81.6 At5g62790 836400 DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE) 1-Deoxy-d-xylulose 5-phosphate reductoisomerase (DXR) catalyzes the first committed step of the 2-C-methyl-d-erythritol 4-phosphate pathway for isoprenoid biosynthesis. In Arabidopsis, DXR is encoded by a single-copy gene. Arabidopsis DXR is targeted to plastids and localizes into chloroplasts of leaf cells. DXR knockout or strongly silenced lines have a seedling lethal, albino phenotype. Transgenic, partially silenced lines expressing 35S:DXR have a variegated phenotype. O.I. H.G. S.X.
0.50 65.3 At5g45170 834553 CbbY protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO O.I. H.G. S.X.
0.47 61.2 At5g22830 832346 ATMGT10 (MAGNESIUM (MG) TRANSPORTER 10) putative Mg(2+) transport protein O.I. H.G. S.X.
0.40 50.8 At4g14210 827061 PDS3 (PHYTOENE DESATURASE 3) Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid. O.I. H.G. S.X.
0.38 46.7 At4g15110 827177 CYP97B3 member of CYP97B O.I. H.G. S.X.
0.33 38.1 At5g14460 831297 pseudouridine synthase/ transporter F:pseudouridine synthase activity, transporter activity;P:tRNA processing, pseudouridine synthesis, RNA modification, tRNA pseudouridine synthesis;C:chloroplast;BOMFAP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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