Co-expression analysis

Gene ID	Gma.2708.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g30580: GTP binding (HF=1e-82)
Module size	8 genes
NF	0.69
%ile	94.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	79.5	0.98	Gma.2708.1.S1_at	AW350781	-	-	1e-82	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.80	91.5	0.99	Gma.3820.1.S1_at	AW156783	-	-	9e-34	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.77	90.3	0.99	Gma.317.1.S1_s_at	CD416707	-	-	3e-49	At2g41840	40S ribosomal protein S2 (RPS2C)	O.I.	H.G.	S.X.	Please select
0.71	87.8	0.99	Gma.4208.2.S1_at	CD401340	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.67	86.1	0.99	GmaAffx.51048.1.S1_s_at	BM521698	-	-	6e-5	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	O.I.	H.G.	S.X.	Please select
0.61	81.8	0.99	Gma.10782.1.S1_s_at	CD410674	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.99	Gma.4208.2.S1_x_at	CD401340	-	-	2e-34	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.99	Gma.8060.1.S1_at	BG725572	-	-	1e-10	At1g51710	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.5	98.3	GSM237069	Soy_shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.2	98.1	GSM237068	Soy_shoot apical meristem	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
5.0	98.0	GSM267288	Axillary meristem from 10-day-old soybean seedlings repliacte 2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
4.2	97.4	GSM191079	Soybean_Cotyledon_ES1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.1	97.3	GSM182031	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.8	97.0	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM147933	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.7	96.8	GSM267287	Axillary meristem from 10-day-old soybean seedlings	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.7	96.8	GSM182030	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.7	96.8	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
3.6	96.7	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
3.6	96.7	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
3.6	96.7	GSM201130	Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.5	96.6	GSM191080	Soybean_Cotyledon_ES2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.5	96.6	GSM182029	Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
3.4	96.4	GSM292243	56_C025.1B.SLB2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM191076	Soybean_Cotyledon_EP2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.2	96.0	GSM147934	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.1	95.8	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.1	95.8	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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