Co-expression analysis

Gene ID Gma.2546.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g62600: ATERDJ3B (HF=6e-35)
Module size 31 genes
NF 0.38
%ile 66.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8793.20.92Gma.2546.1.S1_atCA783454--6e-35At3g62600ATERDJ3BO.I.H.G.S.X.
0.5878.80.95GmaAffx.13865.1.S1_atBI470072--8e-4At5g57300UbiE/COQ5 methyltransferase family proteinO.I.H.G.S.X.
0.5374.20.94GmaAffx.92088.1.S1_atCF807813--6e-8At1g51650ATP synthase epsilon chain, mitochondrialO.I.H.G.S.X.
0.5273.10.95GmaAffx.88869.1.A1_s_atCK605814--6e-18At1g34130STT3B (staurosporin and temperature sensitive 3-like b)O.I.H.G.S.X.
0.4766.60.96GmaAffx.52385.1.S1_atAW101495--7e-11At1g67785unknown proteinO.I.H.G.S.X.
0.4665.50.95Gma.3672.2.S1_atCD407926--3e-89At1g34130STT3B (staurosporin and temperature sensitive 3-like b)O.I.H.G.S.X.
0.4665.50.96Gma.2944.1.S1_atBM270186--4e-15At4g13520SMAP1 (SMALL ACIDIC PROTEIN 1)O.I.H.G.S.X.
0.4563.90.96Gma.16925.1.A1_atBG653419--2e-1At5g66340unknown proteinO.I.H.G.S.X.
0.4360.60.96Gma.12386.1.S1_atCD401243--3e-1At5g59880ADF3 (ACTIN DEPOLYMERIZING FACTOR 3)O.I.H.G.S.X.
0.4360.60.96Gma.4444.3.S1_atCD412673--3e-18At4g18040EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)O.I.H.G.S.X.
0.4259.30.96Gma.2587.1.S1_x_atCD404912--2e-37At5g66140PAD2 (PROTEASOME ALPHA SUBUNIT D 2)O.I.H.G.S.X.
0.4158.10.96Gma.5969.1.S1_a_atCD401397--2e-17At1g67785unknown proteinO.I.H.G.S.X.
0.4158.10.96Gma.5421.1.S1_a_atBI968175--5e-87At1g52600signal peptidase, putativeO.I.H.G.S.X.
0.4057.10.95GmaAffx.73658.1.S1_s_atBM307163Peroxisomal betaine-aldehyde dehydrogenase-2e+0At3g47920unknown proteinO.I.H.G.S.X.
0.3954.50.96Gma.10826.3.S1_atCD390792--1e-85At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.3853.30.97Gma.8916.2.S1_atCA802688--5e-19At2g33220-O.I.H.G.S.X.
0.3650.80.94Gma.16668.1.A1_atCD400594--4e+0At5g14345copper ion binding / electron carrierO.I.H.G.S.X.
0.3447.20.96Gma.6160.1.S1_atCD397751--3e-13At3g52730ubiquinol-cytochrome C reductase UQCRX/QCR9-like family proteinO.I.H.G.S.X.
0.3346.10.96Gma.13205.1.S1_atCD390316--2e-2At4g38630RPN10 (REGULATORY PARTICLE NON-ATPASE 10)O.I.H.G.S.X.
0.3346.10.96Gma.16887.2.S1_atBG509166--2e-37At4g31300PBA1O.I.H.G.S.X.
0.3142.20.95Gma.4549.2.S1_atAW394983--5e-10At2g25110SDF2 (STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN PRECURSOR)O.I.H.G.S.X.
0.3040.40.95Gma.14064.1.A1_s_atCD414956--3e+0At3g26561unknown proteinO.I.H.G.S.X.
0.3040.40.97Gma.17742.2.S1_atBG726544--1e+1At5g44270-O.I.H.G.S.X.
0.2939.00.96GmaAffx.85044.1.S1_atAW734534--1e-3At5g05990mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.
0.2532.60.95Gma.5810.1.S1_atAW309249--2e-72At1g13060PBE1O.I.H.G.S.X.
0.2430.90.96Gma.13196.2.S1_a_atAW278038--4e-1At1g80600WIN1 (HOPW1-1-INTERACTING 1)O.I.H.G.S.X.
0.2430.90.97Gma.8916.2.S1_x_atCA802688--5e-19At2g33220-O.I.H.G.S.X.
0.2430.90.96Gma.18087.1.S1_atBI967917--7e-46At1g31340RUB1 (RELATED TO UBIQUITIN 1)O.I.H.G.S.X.
0.2329.90.96GmaAffx.4385.1.S1_atBG654155--2e+0At4g17980anac071 (Arabidopsis NAC domain containing protein 71)O.I.H.G.S.X.
0.2025.10.96GmaAffx.42933.1.S1_atCA803075--3e+0At4g22000unknown proteinO.I.H.G.S.X.
0.1721.20.95Gma.18032.1.S1_atBG650211--3e-56At4g24190SHD (SHEPHERD)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.398.9GSM182035Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
7.098.8GSM191079Soybean_Cotyledon_ES1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
6.998.8GSM182036Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
6.798.7GSM191080Soybean_Cotyledon_ES2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
6.298.6GSM182034Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.998.5GSM182032Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.998.5GSM201130Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.898.4GSM147941Laser capture microdissected (LCM) endosperm at the globular stage, biological replicate 3GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.898.4GSM147933Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.798.4GSM182029Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 1GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.698.3GSM182033Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.498.2GSM182044Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.498.2GSM191077Soybean_Cotyledon_SUS1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.398.2GSM191078Soybean_Cotyledon_SUS2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
5.298.1GSM201108Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.298.1GSM201103Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.198.1GSM201109Laser capture microdissected (LCM) cotyledon abaxial epidermis at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.198.1GSM182030Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 2GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.198.1GSM201118Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.098.0GSM147942Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.098.0GSM182031Laser capture microdissected (LCM) embryo proper at the heart stage, biological replicate 3GSE7511Expression data from soybean seed compartments with embryos at the heart stageLink to GEO
5.098.0GSM147934Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.098.0GSM147943Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stageLink to GEO
5.098.0GSM201119Laser capture microdissected (LCM) seed coat aleurone at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
5.098.0GSM191075Soybean_Cotyledon_EP1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.998.0GSM191076Soybean_Cotyledon_EP2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.998.0GSM201111Laser capture microdissected (LCM) cotyledon abaxial parenchyma at the early maturation stage, biological replicate 2GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.998.0GSM201102Laser capture microdissected (LCM) axis root meristem at the early maturation stage, biological replicate 1GSE8112Expression data from soybean seed compartments with embryos at the early maturation stageLink to GEO
4.998.0GSM191090Soybean_Cotyledon_OI2GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO
4.998.0GSM191089Soybean_Cotyledon_OI1GSE7881Expression data from soybean seed compartments with embryos at the cotyledon stageLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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