CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Gma.2313.2.S1_s_at

Gene name hypothetical LOC547601
Homology with Arabidopsis Similar to At4g27450: unknown protein (HF=2e-35)

Module size 6 genes

NF 0.77

%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 79.5 0.97 Gma.2313.2.S1_s_at BI700522 hypothetical LOC547601 - 2e-35 At4g27450 unknown protein O.I. H.G. S.X.
0.91 98.6 0.97 GmaAffx.92834.1.S1_at CF808559 - - 6e-6 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.
0.83 92.5 0.97 GmaAffx.92834.1.S1_x_at CF808559 - - 6e-6 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.
0.67 86.1 0.97 Gma.10907.1.S1_s_at CA851238 - - 1e-5 At4g27450 unknown protein O.I. H.G. S.X.
0.67 86.1 0.97 Gma.3508.1.S1_s_at BI968765 - - 5e-71 At5g56870 BGAL4 (beta-galactosidase 4) O.I. H.G. S.X.
0.60 80.7 0.97 Gma.4182.1.S1_s_at CF920322 - - 5e-7 At5g28050 cytidine/deoxycytidylate deaminase family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.0 97.2 GSM209579 susceptible_24hours_rep1 failed QC GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.7 96.8 GSM292373 47_C104.1F.R9F3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM292158 10_C010.1A.R9A2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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