Co-expression analysis

Gene ID Gma.2313.2.S1_s_at
Gene name hypothetical LOC547601
Homology with ArabidopsisSimilar to At4g27450: unknown protein (HF=2e-35)
Module size 6 genes
NF 0.77
%ile 97.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5979.50.97Gma.2313.2.S1_s_atBI700522hypothetical LOC547601-2e-35At4g27450unknown proteinO.I.H.G.S.X.
0.9198.60.97GmaAffx.92834.1.S1_atCF808559--6e-6At5g28050cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.8392.50.97GmaAffx.92834.1.S1_x_atCF808559--6e-6At5g28050cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.
0.6786.10.97Gma.10907.1.S1_s_atCA851238--1e-5At4g27450unknown proteinO.I.H.G.S.X.
0.6786.10.97Gma.3508.1.S1_s_atBI968765--5e-71At5g56870BGAL4 (beta-galactosidase 4)O.I.H.G.S.X.
0.6080.70.97Gma.4182.1.S1_s_atCF920322--5e-7At5g28050cytidine/deoxycytidylate deaminase family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.097.2GSM209579susceptible_24hours_rep1 *failed QC*GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhiziLink to GEO
3.796.8GSM29237347_C104.1F.R9F3P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO
3.496.4GSM29215810_C010.1A.R9A2P, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojaeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage