Co-expression analysis

Gene ID	Gma.2266.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At2g37040: pal1 (Phe ammonia lyase 1) (HF=2e-48)
Module size	8 genes
NF	0.53
%ile	84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	0.97	Gma.2266.1.S1_s_at	BG839284	-	-	2e-48	At2g37040	pal1 (Phe ammonia lyase 1)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	Gma.10705.1.S1_a_at	CD393805	plastid glucose 6 phosphate/phosphate translocator-like	-	3e-47	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	Gma.10705.1.S1_at	CD393805	plastid glucose 6 phosphate/phosphate translocator-like	-	3e-47	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.93071.1.S1_s_at	CF808796	-	-	2e-52	At5g13420	transaldolase, putative	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.7492.1.S1_at	AW597705	-	-	1e-45	At3g22200	POP2 (POLLEN-PISTIL INCOMPATIBILITY 2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.11220.2.S1_a_at	CF920389	-	-	2e-19	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.4310.1.S1_at	BE822674	chorismate synthase	-	3e-58	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.3881.1.S1_at	X92437.1	-	-	8e-23	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1610206_at, orthologous to the query gene, Gma.2266.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	91.3	1610206_at	At2g37040	hypothetical protein LOC100241377	-	2e-29	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1613004_s_at	At2g37040	hypothetical protein LOC100266950	-	3e-2	At5g40630	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.41	58.7	1618362_s_at	At2g37040	hypothetical protein LOC100255189	-	2e-74	At1g10670	ACLA-1	O.I.	H.G.	S.X.	Please select
0.34	46.8	1619357_at	At2g37040	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-71	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.33	45.7	1621754_at	At2g37040	hypothetical protein LOC100253148	-	4e-9	At2g22670	IAA8	O.I.	H.G.	S.X.	Please select
0.30	39.4	1620651_at	At2g37040	hypothetical protein LOC100248095	-	2e-2	At1g52760	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1616254_a_at	At2g37040	hypothetical protein LOC100261951	-	1e+0	At3g52800	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1618440_s_at	At2g37040	hypothetical protein LOC100256565	-	2e-2	At5g15600	SP1L4 (SPIRAL1-LIKE4)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1621689_at	At2g37040	hypothetical protein LOC100263819	-	3e-70	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1613917_s_at	At2g37040	hypothetical protein LOC100248555	-	1e-1	At3g05300	cytidine/deoxycytidylate deaminase family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1611799_at	At2g37040	hypothetical protein LOC100255639	-	4e-4	At5g06700	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	1612766_s_at	At2g37040	hypothetical protein LOC100263819	-	4e+0	At2g20310	RIN13 (RPM1 INTERACTING PROTEIN 13)	O.I.	H.G.	S.X.	Please select
0.17	18.2	1613567_at	At2g37040	-	-	3e-2	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please select
0.16	16.7	1615211_at	At2g37040	hypothetical protein LOC100267901	-	3e-8	At2g26280	CID7	O.I.	H.G.	S.X.	Please select
0.15	15.6	1608238_at	At2g37040	hypothetical protein LOC100247004	-	1e+0	At1g56660	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1614440_at	At2g37040	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase	-	2e-53	At4g39980	DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1)	O.I.	H.G.	S.X.	Please select
0.14	14.4	1615875_at	At2g37040	hypothetical protein LOC100262865	-	6e-2	At3g01516	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	12.1	1609007_at	At2g37040	hypothetical protein LOC100240979	-	5e-27	At4g30210	ATR2 (ARABIDOPSIS P450 REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.10	10.3	1621863_at	At2g37040	hypothetical protein LOC100253181	-	8e-2	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.07	7.8	1622350_at	At2g37040	-	-	7e-6	At5g46340	O-acetyltransferase-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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