Co-expression analysis

Gene ID	Gma.2266.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At2g37040: pal1 (Phe ammonia lyase 1) (HF=2e-48)
Module size	8 genes
NF	0.53
%ile	84.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	91.9	0.97	Gma.2266.1.S1_s_at	BG839284	-	-	2e-48	At2g37040	pal1 (Phe ammonia lyase 1)	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	Gma.10705.1.S1_a_at	CD393805	plastid glucose 6 phosphate/phosphate translocator-like	-	3e-47	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.55	76.3	0.98	Gma.10705.1.S1_at	CD393805	plastid glucose 6 phosphate/phosphate translocator-like	-	3e-47	At5g54800	GPT1	O.I.	H.G.	S.X.	Please select
0.50	71.7	0.98	GmaAffx.93071.1.S1_s_at	CF808796	-	-	2e-52	At5g13420	transaldolase, putative	O.I.	H.G.	S.X.	Please select
0.43	60.6	0.98	Gma.7492.1.S1_at	AW597705	-	-	1e-45	At3g22200	POP2 (POLLEN-PISTIL INCOMPATIBILITY 2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	0.98	Gma.11220.2.S1_a_at	CF920389	-	-	2e-19	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	O.I.	H.G.	S.X.	Please select
0.33	46.1	0.97	Gma.4310.1.S1_at	BE822674	chorismate synthase	-	3e-58	At1g48850	EMB1144 (embryo defective 1144)	O.I.	H.G.	S.X.	Please select
0.31	42.2	0.98	Gma.3881.1.S1_at	X92437.1	-	-	8e-23	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.1672.2.A1_x_at, orthologous to the query gene, Gma.2266.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	84.9	PtpAffx.1672.2.A1_x_at	At2g37040	-	-	8e-24	At2g37040	pal1 (Phe ammonia lyase 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.37081.1.A1_at	At2g37040	chromatin remodeling complex subunit	-	4e-39	At1g61140	EDA16 (embryo sac development arrest 16)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.57272.1.A1_at	At2g37040	-	-	4e-12	At2g17990	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.30758.1.S1_at	At2g37040	hypothetical protein	-	2e+0	At2g03160	ASK19 (ARABIDOPSIS SKP1-LIKE 19)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.1454.1.S1_a_at	At2g37040	hypothetical protein	-	4e-9	At3g08505	zinc finger (CCCH-type/C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	Ptp.3320.1.S1_s_at	At2g37040	hypothetical protein	-	6e-7	At1g69460	emp24/gp25L/p24 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage